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CCDC189 (coiled-coil domain containing 189)

Identity

Alias_namesC16orf93
chromosome 16 open reading frame 93
Alias_symbol (synonym)MGC104706
Other alias
HGNC (Hugo) CCDC189
LocusID (NCBI) 90835
Atlas_Id 77816
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 30768744 and ends at 30773565 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CCDC189 (16p11.2) / PHKG2 (16p11.2)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CCDC189   28078
Cards
Entrez_Gene (NCBI)CCDC189  90835  coiled-coil domain containing 189
AliasesC16orf93
GeneCards (Weizmann)CCDC189
Ensembl hg19 (Hinxton)ENSG00000196118 [Gene_View]  chr16:30768744-30773565 [Contig_View]  CCDC189 [Vega]
Ensembl hg38 (Hinxton)ENSG00000196118 [Gene_View]  chr16:30768744-30773565 [Contig_View]  CCDC189 [Vega]
ICGC DataPortalENSG00000196118
TCGA cBioPortalCCDC189
AceView (NCBI)CCDC189
Genatlas (Paris)CCDC189
WikiGenes90835
SOURCE (Princeton)CCDC189
Genetics Home Reference (NIH)CCDC189
Genomic and cartography
GoldenPath hg19 (UCSC)CCDC189  -     chr16:30768744-30773565 -  16p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCDC189  -     16p11.2   [Description]    (hg38-Dec_2013)
EnsemblCCDC189 - 16p11.2 [CytoView hg19]  CCDC189 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBICCDC189 [Mapview hg19]  CCDC189 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001014979 NM_001195620
RefSeq genomic (Entrez)NC_000016 NC_018927 NG_016616 NT_187260 NW_004929400
Consensus coding sequences : CCDS (NCBI)CCDC189
Cluster EST : UnigeneHs.724010 [ NCBI ]
CGAP (NCI)Hs.724010
Alternative Splicing GalleryENSG00000196118
Gene ExpressionCCDC189 [ NCBI-GEO ]   CCDC189 [ EBI - ARRAY_EXPRESS ]   CCDC189 [ SEEK ]   CCDC189 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC189 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)90835
GTEX Portal (Tissue expression)CCDC189
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC189
DMDM Disease mutations90835
Blocks (Seattle)CCDC189
Human Protein AtlasENSG00000196118
HPRD18705
IPIIPI00787135   IPI00885135   IPI00885184   IPI01012085   IPI01009897   IPI01010410   
Protein Interaction databases
FunCoupENSG00000196118
BioGRIDCCDC189
STRING (EMBL)CCDC189
ZODIACCCDC189
Ontologies - Pathways
Huge Navigator CCDC189 [HugePedia]
snp3D : Map Gene to Disease90835
BioCentury BCIQCCDC189
ClinGenCCDC189
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90835
Chemical/Pharm GKB GenePA164716879
Clinical trialCCDC189
Miscellaneous
canSAR (ICR)CCDC189 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC189
EVEXCCDC189
GoPubMedCCDC189
iHOPCCDC189
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:58:32 CET 2017

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