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CCDC189 (coiled-coil domain containing 189)

Identity

Alias_namesC16orf93
chromosome 16 open reading frame 93
Alias_symbol (synonym)MGC104706
Other alias
HGNC (Hugo) CCDC189
LocusID (NCBI) 90835
Atlas_Id 77816
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 30757423 and ends at 30762244 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCDC189 (16p11.2) / PHKG2 (16p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC189   28078
Cards
Entrez_Gene (NCBI)CCDC189  90835  coiled-coil domain containing 189
AliasesC16orf93
GeneCards (Weizmann)CCDC189
Ensembl hg19 (Hinxton)ENSG00000196118 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196118 [Gene_View]  chr16:30757423-30762244 [Contig_View]  CCDC189 [Vega]
ICGC DataPortalENSG00000196118
TCGA cBioPortalCCDC189
AceView (NCBI)CCDC189
Genatlas (Paris)CCDC189
WikiGenes90835
SOURCE (Princeton)CCDC189
Genetics Home Reference (NIH)CCDC189
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC189  -     chr16:30757423-30762244 -  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC189  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblCCDC189 - 16p11.2 [CytoView hg19]  CCDC189 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBICCDC189 [Mapview hg19]  CCDC189 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK307279 AL122109 BC042548 BC063391 BC073881
RefSeq transcript (Entrez)NM_001014979 NM_001195620
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC189
Cluster EST : UnigeneHs.724010 [ NCBI ]
CGAP (NCI)Hs.724010
Alternative Splicing GalleryENSG00000196118
Gene ExpressionCCDC189 [ NCBI-GEO ]   CCDC189 [ EBI - ARRAY_EXPRESS ]   CCDC189 [ SEEK ]   CCDC189 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC189 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90835
GTEX Portal (Tissue expression)CCDC189
Protein : pattern, domain, 3D structure
UniProt/SwissProtA1A4V9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA1A4V9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA1A4V9
Splice isoforms : SwissVarA1A4V9
PhosPhoSitePlusA1A4V9
Domains : Interpro (EBI)CLAMP   
Domain families : Pfam (Sanger)CLAMP (PF14769)   
Domain families : Pfam (NCBI)pfam14769   
Conserved Domain (NCBI)CCDC189
DMDM Disease mutations90835
Blocks (Seattle)CCDC189
SuperfamilyA1A4V9
Human Protein AtlasENSG00000196118
Peptide AtlasA1A4V9
HPRD18705
IPIIPI00787135   IPI00885135   IPI00885184   IPI01012085   IPI01009897   IPI01010410   
Protein Interaction databases
DIP (DOE-UCLA)A1A4V9
IntAct (EBI)A1A4V9
FunCoupENSG00000196118
BioGRIDCCDC189
STRING (EMBL)CCDC189
ZODIACCCDC189
Ontologies - Pathways
QuickGOA1A4V9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC189
Atlas of Cancer Signalling NetworkCCDC189
Wikipedia pathwaysCCDC189
Orthology - Evolution
OrthoDB90835
GeneTree (enSembl)ENSG00000196118
Phylogenetic Trees/Animal Genes : TreeFamCCDC189
HOVERGENA1A4V9
HOGENOMA1A4V9
Homologs : HomoloGeneCCDC189
Homology/Alignments : Family Browser (UCSC)CCDC189
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC189 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC189
dbVarCCDC189
ClinVarCCDC189
1000_GenomesCCDC189 
Exome Variant ServerCCDC189
ExAC (Exome Aggregation Consortium)CCDC189 (select the gene name)
Genetic variants : HAPMAP90835
Genomic Variants (DGV)CCDC189 [DGVbeta]
DECIPHERCCDC189 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC189 
Mutations
ICGC Data PortalCCDC189 
TCGA Data PortalCCDC189 
Broad Tumor PortalCCDC189
OASIS PortalCCDC189 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCCDC189
BioMutasearch CCDC189
DgiDB (Drug Gene Interaction Database)CCDC189
DoCM (Curated mutations)CCDC189 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC189 (select a term)
intoGenCCDC189
Cancer3DCCDC189(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC189
Genetic Testing Registry CCDC189
NextProtA1A4V9 [Medical]
TSGene90835
GENETestsCCDC189
Target ValidationCCDC189
Huge Navigator CCDC189 [HugePedia]
snp3D : Map Gene to Disease90835
BioCentury BCIQCCDC189
ClinGenCCDC189
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90835
Chemical/Pharm GKB GenePA164716879
Clinical trialCCDC189
Miscellaneous
canSAR (ICR)CCDC189 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC189
EVEXCCDC189
GoPubMedCCDC189
iHOPCCDC189
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:42:34 CEST 2017

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