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CCDC190 (coiled-coil domain containing 190)

Identity

Alias_namesC1orf110
chromosome 1 open reading frame 110
Alias_symbol (synonym)MGC48998
Other alias
HGNC (Hugo) CCDC190
LocusID (NCBI) 339512
Atlas_Id 77817
Location 1q23.3  [Link to chromosome band 1q23]
Location_base_pair Starts at 162854297 and ends at 162868815 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SDE2 (1q42.12) / CCDC190 (1q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC190   28736
Cards
Entrez_Gene (NCBI)CCDC190  339512  coiled-coil domain containing 190
AliasesC1orf110
GeneCards (Weizmann)CCDC190
Ensembl hg19 (Hinxton)ENSG00000185860 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185860 [Gene_View]  chr1:162854297-162868815 [Contig_View]  CCDC190 [Vega]
ICGC DataPortalENSG00000185860
TCGA cBioPortalCCDC190
AceView (NCBI)CCDC190
Genatlas (Paris)CCDC190
WikiGenes339512
SOURCE (Princeton)CCDC190
Genetics Home Reference (NIH)CCDC190
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC190  -     chr1:162854297-162868815 -  1q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC190  -     1q23.3   [Description]    (hg19-Feb_2009)
EnsemblCCDC190 - 1q23.3 [CytoView hg19]  CCDC190 - 1q23.3 [CytoView hg38]
Mapping of homologs : NCBICCDC190 [Mapview hg19]  CCDC190 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123573 AK309620 BC040018
RefSeq transcript (Entrez)NM_178550
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC190
Cluster EST : UnigeneHs.407631 [ NCBI ]
CGAP (NCI)Hs.407631
Alternative Splicing GalleryENSG00000185860
Gene ExpressionCCDC190 [ NCBI-GEO ]   CCDC190 [ EBI - ARRAY_EXPRESS ]   CCDC190 [ SEEK ]   CCDC190 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC190 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339512
GTEX Portal (Tissue expression)CCDC190
Human Protein AtlasENSG00000185860-CCDC190 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86UF4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86UF4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86UF4
Splice isoforms : SwissVarQ86UF4
PhosPhoSitePlusQ86UF4
Domains : Interpro (EBI)CC190   
Domain families : Pfam (Sanger)CC190 (PF15768)   
Domain families : Pfam (NCBI)pfam15768   
Conserved Domain (NCBI)CCDC190
DMDM Disease mutations339512
Blocks (Seattle)CCDC190
SuperfamilyQ86UF4
Human Protein Atlas [tissue]ENSG00000185860-CCDC190 [tissue]
Peptide AtlasQ86UF4
HPRD14661
IPIIPI00244135   IPI00828155   IPI00640277   
Protein Interaction databases
DIP (DOE-UCLA)Q86UF4
IntAct (EBI)Q86UF4
FunCoupENSG00000185860
BioGRIDCCDC190
STRING (EMBL)CCDC190
ZODIACCCDC190
Ontologies - Pathways
QuickGOQ86UF4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC190
Atlas of Cancer Signalling NetworkCCDC190
Wikipedia pathwaysCCDC190
Orthology - Evolution
OrthoDB339512
GeneTree (enSembl)ENSG00000185860
Phylogenetic Trees/Animal Genes : TreeFamCCDC190
HOVERGENQ86UF4
HOGENOMQ86UF4
Homologs : HomoloGeneCCDC190
Homology/Alignments : Family Browser (UCSC)CCDC190
Gene fusions - Rearrangements
Tumor Fusion PortalCCDC190
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC190 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC190
dbVarCCDC190
ClinVarCCDC190
1000_GenomesCCDC190 
Exome Variant ServerCCDC190
ExAC (Exome Aggregation Consortium)ENSG00000185860
GNOMAD BrowserENSG00000185860
Genetic variants : HAPMAP339512
Genomic Variants (DGV)CCDC190 [DGVbeta]
DECIPHERCCDC190 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC190 
Mutations
ICGC Data PortalCCDC190 
TCGA Data PortalCCDC190 
Broad Tumor PortalCCDC190
OASIS PortalCCDC190 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCCDC190
BioMutasearch CCDC190
DgiDB (Drug Gene Interaction Database)CCDC190
DoCM (Curated mutations)CCDC190 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC190 (select a term)
intoGenCCDC190
Cancer3DCCDC190(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCDC190
MedgenCCDC190
Genetic Testing Registry CCDC190
NextProtQ86UF4 [Medical]
TSGene339512
GENETestsCCDC190
Target ValidationCCDC190
Huge Navigator CCDC190 [HugePedia]
snp3D : Map Gene to Disease339512
BioCentury BCIQCCDC190
ClinGenCCDC190
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339512
Chemical/Pharm GKB GenePA142672494
Clinical trialCCDC190
Miscellaneous
canSAR (ICR)CCDC190 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC190
EVEXCCDC190
GoPubMedCCDC190
iHOPCCDC190
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:23:09 CET 2017

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