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CCDC192 (coiled-coil domain containing 192)

Identity

Alias_namesLINC01183
long intergenic non-protein coding RNA 1183
coiled-coil domain containing
Other alias
HGNC (Hugo) CCDC192
LocusID (NCBI) 728586
Atlas_Id 77819
Location 5q23.2  [Link to chromosome band 5q23]
Location_base_pair Starts at 127703389 and ends at 127941516 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC192   49566
Cards
Entrez_Gene (NCBI)CCDC192  728586  coiled-coil domain containing 192
AliasesLINC01183
GeneCards (Weizmann)CCDC192
Ensembl hg19 (Hinxton)ENSG00000230561 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000230561 [Gene_View]  chr5:127703389-127941516 [Contig_View]  CCDC192 [Vega]
ICGC DataPortalENSG00000230561
TCGA cBioPortalCCDC192
AceView (NCBI)CCDC192
Genatlas (Paris)CCDC192
WikiGenes728586
SOURCE (Princeton)CCDC192
Genetics Home Reference (NIH)CCDC192
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC192  -     chr5:127703389-127941516 +  5q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC192  -     5q23.2   [Description]    (hg19-Feb_2009)
EnsemblCCDC192 - 5q23.2 [CytoView hg19]  CCDC192 - 5q23.2 [CytoView hg38]
Mapping of homologs : NCBICCDC192 [Mapview hg19]  CCDC192 [Mapview hg38]
Gene and transcription
Genbank (Entrez)HY052603 HY240325
RefSeq transcript (Entrez)NM_001317938
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC192
Cluster EST : UnigeneHs.582532 [ NCBI ]
CGAP (NCI)Hs.582532
Alternative Splicing GalleryENSG00000230561
Gene ExpressionCCDC192 [ NCBI-GEO ]   CCDC192 [ EBI - ARRAY_EXPRESS ]   CCDC192 [ SEEK ]   CCDC192 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC192 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728586
GTEX Portal (Tissue expression)CCDC192
Human Protein AtlasENSG00000230561-CCDC192 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DO97   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DO97  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DO97
Splice isoforms : SwissVarP0DO97
PhosPhoSitePlusP0DO97
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC192
DMDM Disease mutations728586
Blocks (Seattle)CCDC192
SuperfamilyP0DO97
Human Protein Atlas [tissue]ENSG00000230561-CCDC192 [tissue]
Peptide AtlasP0DO97
Protein Interaction databases
DIP (DOE-UCLA)P0DO97
IntAct (EBI)P0DO97
FunCoupENSG00000230561
BioGRIDCCDC192
STRING (EMBL)CCDC192
ZODIACCCDC192
Ontologies - Pathways
QuickGOP0DO97
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC192
Atlas of Cancer Signalling NetworkCCDC192
Wikipedia pathwaysCCDC192
Orthology - Evolution
OrthoDB728586
GeneTree (enSembl)ENSG00000230561
Phylogenetic Trees/Animal Genes : TreeFamCCDC192
HOVERGENP0DO97
HOGENOMP0DO97
Homologs : HomoloGeneCCDC192
Homology/Alignments : Family Browser (UCSC)CCDC192
Gene fusions - Rearrangements
Tumor Fusion PortalCCDC192
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC192 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC192
dbVarCCDC192
ClinVarCCDC192
1000_GenomesCCDC192 
Exome Variant ServerCCDC192
ExAC (Exome Aggregation Consortium)ENSG00000230561
GNOMAD BrowserENSG00000230561
Genetic variants : HAPMAP728586
Genomic Variants (DGV)CCDC192 [DGVbeta]
DECIPHERCCDC192 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC192 
Mutations
ICGC Data PortalCCDC192 
TCGA Data PortalCCDC192 
Broad Tumor PortalCCDC192
OASIS PortalCCDC192 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCCDC192
BioMutasearch CCDC192
DgiDB (Drug Gene Interaction Database)CCDC192
DoCM (Curated mutations)CCDC192 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC192 (select a term)
intoGenCCDC192
Cancer3DCCDC192(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCDC192
MedgenCCDC192
Genetic Testing Registry CCDC192
NextProtP0DO97 [Medical]
TSGene728586
GENETestsCCDC192
Target ValidationCCDC192
Huge Navigator CCDC192 [HugePedia]
snp3D : Map Gene to Disease728586
BioCentury BCIQCCDC192
ClinGenCCDC192
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728586
Clinical trialCCDC192
Miscellaneous
canSAR (ICR)CCDC192 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC192
EVEXCCDC192
GoPubMedCCDC192
iHOPCCDC192
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:11:32 CET 2017

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