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CCDC196 (coiled-coil domain containing 196)

Identity

Alias_namesC14orf53
NCRNA00238
LINC00238
chromosome 14 open reading frame 53
non-protein coding RNA 238
long intergenic non-protein coding RNA 238
Other alias
HGNC (Hugo) CCDC196
LocusID (NCBI) 440184
Atlas_Id 79836
Location 14q23.3  [Link to chromosome band 14q23]
Location_base_pair Starts at 66486371 and ends at 66498553 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CCDC196   20100
Cards
Entrez_Gene (NCBI)CCDC196  440184  coiled-coil domain containing 196
AliasesC14orf53; LINC00238; NCRNA00238
GeneCards (Weizmann)CCDC196
Ensembl hg19 (Hinxton)ENSG00000196553 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196553 [Gene_View]  chr14:66486371-66498553 [Contig_View]  CCDC196 [Vega]
ICGC DataPortalENSG00000196553
TCGA cBioPortalCCDC196
AceView (NCBI)CCDC196
Genatlas (Paris)CCDC196
WikiGenes440184
SOURCE (Princeton)CCDC196
Genetics Home Reference (NIH)CCDC196
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC196  -     chr14:66486371-66498553 +  14q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC196  -     14q23.3   [Description]    (hg19-Feb_2009)
EnsemblCCDC196 - 14q23.3 [CytoView hg19]  CCDC196 - 14q23.3 [CytoView hg38]
Mapping of homologs : NCBICCDC196 [Mapview hg19]  CCDC196 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC033546 BC056671 BC070365 BI829888
RefSeq transcript (Entrez)NM_001004331 NM_001351576
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC196
Cluster EST : UnigeneHs.412138 [ NCBI ]
CGAP (NCI)Hs.412138
Alternative Splicing GalleryENSG00000196553
Gene ExpressionCCDC196 [ NCBI-GEO ]   CCDC196 [ EBI - ARRAY_EXPRESS ]   CCDC196 [ SEEK ]   CCDC196 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC196 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)440184
GTEX Portal (Tissue expression)CCDC196
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC196
DMDM Disease mutations440184
Blocks (Seattle)CCDC196
Human Protein AtlasENSG00000196553
IPIIPI00419507   
Protein Interaction databases
FunCoupENSG00000196553
BioGRIDCCDC196
STRING (EMBL)CCDC196
ZODIACCCDC196
Ontologies - Pathways
Huge Navigator CCDC196 [HugePedia]
snp3D : Map Gene to Disease440184
BioCentury BCIQCCDC196
ClinGenCCDC196
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440184
Chemical/Pharm GKB GenePA165479209
Clinical trialCCDC196
Miscellaneous
canSAR (ICR)CCDC196 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC196
EVEXCCDC196
GoPubMedCCDC196
iHOPCCDC196
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:04:10 CEST 2017

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