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CCDC197 (coiled-coil domain containing 197)

Identity

Alias_namesLINC00521
C14orf48
long intergenic non-protein coding RNA 521
chromosome 14 open reading frame 48
Other aliasc14_5713
HGNC (Hugo) CCDC197
LocusID (NCBI) 256369
Atlas_Id 78863
Location 14q32.12  [Link to chromosome band 14q32]
Location_base_pair Starts at 93997296 and ends at 94008863 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CCDC197   19860
Cards
Entrez_Gene (NCBI)CCDC197  256369  coiled-coil domain containing 197
AliasesC14orf48; LINC00521; c14_5713
GeneCards (Weizmann)CCDC197
Ensembl hg19 (Hinxton)ENSG00000175699 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175699 [Gene_View]  chr14:93997296-94008863 [Contig_View]  CCDC197 [Vega]
ICGC DataPortalENSG00000175699
TCGA cBioPortalCCDC197
AceView (NCBI)CCDC197
Genatlas (Paris)CCDC197
WikiGenes256369
SOURCE (Princeton)CCDC197
Genetics Home Reference (NIH)CCDC197
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC197  -     chr14:93997296-94008863 +  14q32.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC197  -     14q32.12   [Description]    (hg19-Feb_2009)
EnsemblCCDC197 - 14q32.12 [CytoView hg19]  CCDC197 - 14q32.12 [CytoView hg38]
Mapping of homologs : NCBICCDC197 [Mapview hg19]  CCDC197 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA412651 AK097741 AL157489 BC021728 BC031252
RefSeq transcript (Entrez)NM_001351596 NM_152777
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_187601
Consensus coding sequences : CCDS (NCBI)CCDC197
Cluster EST : UnigeneHs.143845 [ NCBI ]
CGAP (NCI)Hs.143845
Alternative Splicing GalleryENSG00000175699
Gene ExpressionCCDC197 [ NCBI-GEO ]   CCDC197 [ EBI - ARRAY_EXPRESS ]   CCDC197 [ SEEK ]   CCDC197 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC197 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)256369
GTEX Portal (Tissue expression)CCDC197
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NCU1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NCU1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NCU1
Splice isoforms : SwissVarQ8NCU1
PhosPhoSitePlusQ8NCU1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC197
DMDM Disease mutations256369
Blocks (Seattle)CCDC197
SuperfamilyQ8NCU1
Human Protein AtlasENSG00000175699
Peptide AtlasQ8NCU1
IPIIPI00168455   IPI00242370   
Protein Interaction databases
DIP (DOE-UCLA)Q8NCU1
IntAct (EBI)Q8NCU1
FunCoupENSG00000175699
BioGRIDCCDC197
STRING (EMBL)CCDC197
ZODIACCCDC197
Ontologies - Pathways
QuickGOQ8NCU1
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkCCDC197
Atlas of Cancer Signalling NetworkCCDC197
Wikipedia pathwaysCCDC197
Orthology - Evolution
OrthoDB256369
GeneTree (enSembl)ENSG00000175699
Phylogenetic Trees/Animal Genes : TreeFamCCDC197
HOVERGENQ8NCU1
HOGENOMQ8NCU1
Homologs : HomoloGeneCCDC197
Homology/Alignments : Family Browser (UCSC)CCDC197
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC197 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC197
dbVarCCDC197
ClinVarCCDC197
1000_GenomesCCDC197 
Exome Variant ServerCCDC197
ExAC (Exome Aggregation Consortium)CCDC197 (select the gene name)
Genetic variants : HAPMAP256369
Genomic Variants (DGV)CCDC197 [DGVbeta]
DECIPHERCCDC197 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC197 
Mutations
ICGC Data PortalCCDC197 
TCGA Data PortalCCDC197 
Broad Tumor PortalCCDC197
OASIS PortalCCDC197 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCCDC197
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC197
DgiDB (Drug Gene Interaction Database)CCDC197
DoCM (Curated mutations)CCDC197 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC197 (select a term)
intoGenCCDC197
Cancer3DCCDC197(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC197
Genetic Testing Registry CCDC197
NextProtQ8NCU1 [Medical]
TSGene256369
GENETestsCCDC197
Target ValidationCCDC197
Huge Navigator CCDC197 [HugePedia]
snp3D : Map Gene to Disease256369
BioCentury BCIQCCDC197
ClinGenCCDC197
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD256369
Chemical/Pharm GKB GenePA134880534
Clinical trialCCDC197
Miscellaneous
canSAR (ICR)CCDC197 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC197
EVEXCCDC197
GoPubMedCCDC197
iHOPCCDC197
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:11 CEST 2017

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