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CCDC198 (coiled-coil domain containing 198)

Identity

Alias_namesC14orf105
chromosome 14 open reading frame 105
Alias_symbol (synonym)FLJ10650
Other alias
HGNC (Hugo) CCDC198
LocusID (NCBI) 55195
Atlas_Id 79898
Location 14q22.3  [Link to chromosome band 14q22]
Location_base_pair Starts at 57469300 and ends at 57493863 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CCDC198   20189
Cards
Entrez_Gene (NCBI)CCDC198  55195  coiled-coil domain containing 198
AliasesC14orf105
GeneCards (Weizmann)CCDC198
Ensembl hg19 (Hinxton)ENSG00000100557 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100557 [Gene_View]  chr14:57469300-57493863 [Contig_View]  CCDC198 [Vega]
ICGC DataPortalENSG00000100557
TCGA cBioPortalCCDC198
AceView (NCBI)CCDC198
Genatlas (Paris)CCDC198
WikiGenes55195
SOURCE (Princeton)CCDC198
Genetics Home Reference (NIH)CCDC198
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC198  -     chr14:57469300-57493863 -  14q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC198  -     14q22.3   [Description]    (hg19-Feb_2009)
EnsemblCCDC198 - 14q22.3 [CytoView hg19]  CCDC198 - 14q22.3 [CytoView hg38]
Mapping of homologs : NCBICCDC198 [Mapview hg19]  CCDC198 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI733133 AK001512 AK223127 AK307238 BC028060
RefSeq transcript (Entrez)NM_001283056 NM_001283057 NM_001283058 NM_001283059 NM_001283060 NM_018168
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC198
Cluster EST : UnigeneHs.659706 [ NCBI ]
CGAP (NCI)Hs.659706
Alternative Splicing GalleryENSG00000100557
Gene ExpressionCCDC198 [ NCBI-GEO ]   CCDC198 [ EBI - ARRAY_EXPRESS ]   CCDC198 [ SEEK ]   CCDC198 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC198 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55195
GTEX Portal (Tissue expression)CCDC198
Human Protein AtlasENSG00000100557-CCDC198 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NVL8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NVL8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NVL8
Splice isoforms : SwissVarQ9NVL8
PhosPhoSitePlusQ9NVL8
Domains : Interpro (EBI)DUF4619   
Domain families : Pfam (Sanger)DUF4619 (PF15398)   
Domain families : Pfam (NCBI)pfam15398   
Conserved Domain (NCBI)CCDC198
DMDM Disease mutations55195
Blocks (Seattle)CCDC198
SuperfamilyQ9NVL8
Human Protein Atlas [tissue]ENSG00000100557-CCDC198 [tissue]
Peptide AtlasQ9NVL8
IPIIPI00018805   IPI00981609   IPI00984251   IPI00807622   IPI00982014   IPI00921799   
Protein Interaction databases
DIP (DOE-UCLA)Q9NVL8
IntAct (EBI)Q9NVL8
FunCoupENSG00000100557
BioGRIDCCDC198
STRING (EMBL)CCDC198
ZODIACCCDC198
Ontologies - Pathways
QuickGOQ9NVL8
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkCCDC198
Atlas of Cancer Signalling NetworkCCDC198
Wikipedia pathwaysCCDC198
Orthology - Evolution
OrthoDB55195
GeneTree (enSembl)ENSG00000100557
Phylogenetic Trees/Animal Genes : TreeFamCCDC198
HOVERGENQ9NVL8
HOGENOMQ9NVL8
Homologs : HomoloGeneCCDC198
Homology/Alignments : Family Browser (UCSC)CCDC198
Gene fusions - Rearrangements
Tumor Fusion PortalCCDC198
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC198 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC198
dbVarCCDC198
ClinVarCCDC198
1000_GenomesCCDC198 
Exome Variant ServerCCDC198
ExAC (Exome Aggregation Consortium)ENSG00000100557
GNOMAD BrowserENSG00000100557
Genetic variants : HAPMAP55195
Genomic Variants (DGV)CCDC198 [DGVbeta]
DECIPHERCCDC198 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC198 
Mutations
ICGC Data PortalCCDC198 
TCGA Data PortalCCDC198 
Broad Tumor PortalCCDC198
OASIS PortalCCDC198 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCCDC198
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC198
DgiDB (Drug Gene Interaction Database)CCDC198
DoCM (Curated mutations)CCDC198 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC198 (select a term)
intoGenCCDC198
Cancer3DCCDC198(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCDC198
MedgenCCDC198
Genetic Testing Registry CCDC198
NextProtQ9NVL8 [Medical]
TSGene55195
GENETestsCCDC198
Target ValidationCCDC198
Huge Navigator CCDC198 [HugePedia]
snp3D : Map Gene to Disease55195
BioCentury BCIQCCDC198
ClinGenCCDC198
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55195
Chemical/Pharm GKB GenePA134868494
Clinical trialCCDC198
Miscellaneous
canSAR (ICR)CCDC198 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC198
EVEXCCDC198
GoPubMedCCDC198
iHOPCCDC198
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:29:19 CET 2017

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