Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CCDC200 (coiled-coil domain containing 200)


Alias (NCBI)LINC00854
HGNC (Hugo) CCDC200
LocusID (NCBI) 100874261
Atlas_Id 80432
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 43221420 and ends at 43228623 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

HGNC (Hugo)CCDC200   43658
Entrez_Gene (NCBI)CCDC200    coiled-coil domain containing 200
AliasesLINC00854; TMEM106A-AS1
GeneCards (Weizmann)CCDC200
Ensembl hg19 (Hinxton)ENSG00000236383 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000236383 [Gene_View]  ENSG00000236383 [Sequence]  chr17:43221420-43228623 [Contig_View]  CCDC200 [Vega]
ICGC DataPortalENSG00000236383
TCGA cBioPortalCCDC200
AceView (NCBI)CCDC200
Genatlas (Paris)CCDC200
SOURCE (Princeton)CCDC200
Genetics Home Reference (NIH)CCDC200
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC200  -     chr17:43221420-43228623 -  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC200  -     17q21.31   [Description]    (hg19-Feb_2009)
GoldenPathCCDC200 - 17q21.31 [CytoView hg19]  CCDC200 - 17q21.31 [CytoView hg38]
Genome Data Viewer NCBICCDC200 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC073918
RefSeq transcript (Entrez)NM_001363254
Consensus coding sequences : CCDS (NCBI)CCDC200
Gene ExpressionCCDC200 [ NCBI-GEO ]   CCDC200 [ EBI - ARRAY_EXPRESS ]   CCDC200 [ SEEK ]   CCDC200 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC200 [ Firebrowse - Broad ]
GenevisibleExpression of CCDC200 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100874261
GTEX Portal (Tissue expression)CCDC200
Human Protein AtlasENSG00000236383-CCDC200 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC200
Human Protein Atlas [tissue]ENSG00000236383-CCDC200 [tissue]
Protein Interaction databases
Ontologies - Pathways
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:45:15 CEST 2021

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