Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CCDC22 (coiled-coil domain containing 22)

Identity

Alias_namesCXorf37
chromosome X open reading frame 37
Alias_symbol (synonym)JM1
Other aliasRTSC2
HGNC (Hugo) CCDC22
LocusID (NCBI) 28952
Atlas_Id 61533
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 49235467 and ends at 49250526 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCDC22 (Xp11.23) / PSPH (7p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC22   28909
Cards
Entrez_Gene (NCBI)CCDC22  28952  coiled-coil domain containing 22
AliasesCXorf37; JM1; RTSC2
GeneCards (Weizmann)CCDC22
Ensembl hg19 (Hinxton)ENSG00000101997 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101997 [Gene_View]  chrX:49235467-49250526 [Contig_View]  CCDC22 [Vega]
ICGC DataPortalENSG00000101997
TCGA cBioPortalCCDC22
AceView (NCBI)CCDC22
Genatlas (Paris)CCDC22
WikiGenes28952
SOURCE (Princeton)CCDC22
Genetics Home Reference (NIH)CCDC22
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC22  -     chrX:49235467-49250526 +  Xp11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC22  -     Xp11.23   [Description]    (hg19-Feb_2009)
EnsemblCCDC22 - Xp11.23 [CytoView hg19]  CCDC22 - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBICCDC22 [Mapview hg19]  CCDC22 [Mapview hg38]
OMIM300859   300963   
Gene and transcription
Genbank (Entrez)AJ005890 AK291976 AK296911 AK298264 AK316375
RefSeq transcript (Entrez)NM_014008
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC22
Cluster EST : UnigeneHs.26333 [ NCBI ]
CGAP (NCI)Hs.26333
Alternative Splicing GalleryENSG00000101997
Gene ExpressionCCDC22 [ NCBI-GEO ]   CCDC22 [ EBI - ARRAY_EXPRESS ]   CCDC22 [ SEEK ]   CCDC22 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC22 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28952
GTEX Portal (Tissue expression)CCDC22
Human Protein AtlasENSG00000101997-CCDC22 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60826   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60826  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60826
Splice isoforms : SwissVarO60826
PhosPhoSitePlusO60826
Domains : Interpro (EBI)CCDC22   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC22
DMDM Disease mutations28952
Blocks (Seattle)CCDC22
SuperfamilyO60826
Human Protein Atlas [tissue]ENSG00000101997-CCDC22 [tissue]
Peptide AtlasO60826
HPRD06594
IPIIPI00022265   IPI01011328   
Protein Interaction databases
DIP (DOE-UCLA)O60826
IntAct (EBI)O60826
FunCoupENSG00000101997
BioGRIDCCDC22
STRING (EMBL)CCDC22
ZODIACCCDC22
Ontologies - Pathways
QuickGOO60826
Ontology : AmiGOprotein binding  cellular_component  endosome  cellular copper ion homeostasis  Golgi to plasma membrane transport  cytoplasmic sequestering of NF-kappaB  protein transport  positive regulation of I-kappaB kinase/NF-kappaB signaling  negative regulation of I-kappaB kinase/NF-kappaB signaling  cullin family protein binding  positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process  
Ontology : EGO-EBIprotein binding  cellular_component  endosome  cellular copper ion homeostasis  Golgi to plasma membrane transport  cytoplasmic sequestering of NF-kappaB  protein transport  positive regulation of I-kappaB kinase/NF-kappaB signaling  negative regulation of I-kappaB kinase/NF-kappaB signaling  cullin family protein binding  positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process  
NDEx NetworkCCDC22
Atlas of Cancer Signalling NetworkCCDC22
Wikipedia pathwaysCCDC22
Orthology - Evolution
OrthoDB28952
GeneTree (enSembl)ENSG00000101997
Phylogenetic Trees/Animal Genes : TreeFamCCDC22
HOVERGENO60826
HOGENOMO60826
Homologs : HomoloGeneCCDC22
Homology/Alignments : Family Browser (UCSC)CCDC22
Gene fusions - Rearrangements
Fusion: Tumor Portal CCDC22
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC22 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC22
dbVarCCDC22
ClinVarCCDC22
1000_GenomesCCDC22 
Exome Variant ServerCCDC22
ExAC (Exome Aggregation Consortium)ENSG00000101997
GNOMAD BrowserENSG00000101997
Genetic variants : HAPMAP28952
Genomic Variants (DGV)CCDC22 [DGVbeta]
DECIPHERCCDC22 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC22 
Mutations
ICGC Data PortalCCDC22 
TCGA Data PortalCCDC22 
Broad Tumor PortalCCDC22
OASIS PortalCCDC22 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC22  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC22
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch CCDC22
DgiDB (Drug Gene Interaction Database)CCDC22
DoCM (Curated mutations)CCDC22 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC22 (select a term)
intoGenCCDC22
Cancer3DCCDC22(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300859    300963   
Orphanet1242   
MedgenCCDC22
Genetic Testing Registry CCDC22
NextProtO60826 [Medical]
TSGene28952
GENETestsCCDC22
Target ValidationCCDC22
Huge Navigator CCDC22 [HugePedia]
snp3D : Map Gene to Disease28952
BioCentury BCIQCCDC22
ClinGenCCDC22
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28952
Chemical/Pharm GKB GenePA134947763
Clinical trialCCDC22
Miscellaneous
canSAR (ICR)CCDC22 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC22
EVEXCCDC22
GoPubMedCCDC22
iHOPCCDC22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:41:44 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.