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CCDC24 (coiled-coil domain containing 24)

Identity

Alias_symbol (synonym)MGC45441
Other alias-
HGNC (Hugo) CCDC24
LocusID (NCBI) 149473
Atlas_Id 61534
Location 1p34.1  [Link to chromosome band 1p34]
Location_base_pair Starts at 43991596 and ends at 43996526 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC24   28688
Cards
Entrez_Gene (NCBI)CCDC24  149473  coiled-coil domain containing 24
Aliases
GeneCards (Weizmann)CCDC24
Ensembl hg19 (Hinxton)ENSG00000159214 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000159214 [Gene_View]  chr1:43991596-43996526 [Contig_View]  CCDC24 [Vega]
ICGC DataPortalENSG00000159214
TCGA cBioPortalCCDC24
AceView (NCBI)CCDC24
Genatlas (Paris)CCDC24
WikiGenes149473
SOURCE (Princeton)CCDC24
Genetics Home Reference (NIH)CCDC24
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC24  -     chr1:43991596-43996526 +  1p34.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC24  -     1p34.1   [Description]    (hg19-Feb_2009)
EnsemblCCDC24 - 1p34.1 [CytoView hg19]  CCDC24 - 1p34.1 [CytoView hg38]
Mapping of homologs : NCBICCDC24 [Mapview hg19]  CCDC24 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024289 AK092569 AY487420 BC033868 BC047313
RefSeq transcript (Entrez)NM_001349127 NM_001349128 NM_001349129 NM_152499
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC24
Cluster EST : UnigeneHs.632394 [ NCBI ]
CGAP (NCI)Hs.632394
Alternative Splicing GalleryENSG00000159214
Gene ExpressionCCDC24 [ NCBI-GEO ]   CCDC24 [ EBI - ARRAY_EXPRESS ]   CCDC24 [ SEEK ]   CCDC24 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC24 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149473
GTEX Portal (Tissue expression)CCDC24
Human Protein AtlasENSG00000159214-CCDC24 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N4L8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N4L8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N4L8
Splice isoforms : SwissVarQ8N4L8
PhosPhoSitePlusQ8N4L8
Domains : Interpro (EBI)CCDC24   
Domain families : Pfam (Sanger)CCDC24 (PF15669)   
Domain families : Pfam (NCBI)pfam15669   
Conserved Domain (NCBI)CCDC24
DMDM Disease mutations149473
Blocks (Seattle)CCDC24
SuperfamilyQ8N4L8
Human Protein Atlas [tissue]ENSG00000159214-CCDC24 [tissue]
Peptide AtlasQ8N4L8
HPRD14636
IPIIPI00166724   IPI00746143   IPI00807419   IPI00816772   
Protein Interaction databases
DIP (DOE-UCLA)Q8N4L8
IntAct (EBI)Q8N4L8
FunCoupENSG00000159214
BioGRIDCCDC24
STRING (EMBL)CCDC24
ZODIACCCDC24
Ontologies - Pathways
QuickGOQ8N4L8
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkCCDC24
Atlas of Cancer Signalling NetworkCCDC24
Wikipedia pathwaysCCDC24
Orthology - Evolution
OrthoDB149473
GeneTree (enSembl)ENSG00000159214
Phylogenetic Trees/Animal Genes : TreeFamCCDC24
HOVERGENQ8N4L8
HOGENOMQ8N4L8
Homologs : HomoloGeneCCDC24
Homology/Alignments : Family Browser (UCSC)CCDC24
Gene fusions - Rearrangements
Fusion: Tumor Portal CCDC24
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC24 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC24
dbVarCCDC24
ClinVarCCDC24
1000_GenomesCCDC24 
Exome Variant ServerCCDC24
ExAC (Exome Aggregation Consortium)ENSG00000159214
GNOMAD BrowserENSG00000159214
Genetic variants : HAPMAP149473
Genomic Variants (DGV)CCDC24 [DGVbeta]
DECIPHERCCDC24 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC24 
Mutations
ICGC Data PortalCCDC24 
TCGA Data PortalCCDC24 
Broad Tumor PortalCCDC24
OASIS PortalCCDC24 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC24  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC24
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC24
DgiDB (Drug Gene Interaction Database)CCDC24
DoCM (Curated mutations)CCDC24 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC24 (select a term)
intoGenCCDC24
Cancer3DCCDC24(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC24
Genetic Testing Registry CCDC24
NextProtQ8N4L8 [Medical]
TSGene149473
GENETestsCCDC24
Target ValidationCCDC24
Huge Navigator CCDC24 [HugePedia]
snp3D : Map Gene to Disease149473
BioCentury BCIQCCDC24
ClinGenCCDC24
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD149473
Chemical/Pharm GKB GenePA142672182
Clinical trialCCDC24
Miscellaneous
canSAR (ICR)CCDC24 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC24
EVEXCCDC24
GoPubMedCCDC24
iHOPCCDC24
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:41:44 CET 2017

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