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CCDC25 (coiled-coil domain containing 25)

Identity

Alias_symbol (synonym)FLJ10853
Other alias-
HGNC (Hugo) CCDC25
LocusID (NCBI) 55246
Atlas_Id 61535
Location 8p21.1  [Link to chromosome band 8p21]
Location_base_pair Starts at 27590833 and ends at 27630170 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TMEM259 (19p13.3) / CCDC25 (8p21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC25   25591
Cards
Entrez_Gene (NCBI)CCDC25  55246  coiled-coil domain containing 25
Aliases
GeneCards (Weizmann)CCDC25
Ensembl hg19 (Hinxton)ENSG00000147419 [Gene_View]  chr8:27590833-27630170 [Contig_View]  CCDC25 [Vega]
Ensembl hg38 (Hinxton)ENSG00000147419 [Gene_View]  chr8:27590833-27630170 [Contig_View]  CCDC25 [Vega]
ICGC DataPortalENSG00000147419
TCGA cBioPortalCCDC25
AceView (NCBI)CCDC25
Genatlas (Paris)CCDC25
WikiGenes55246
SOURCE (Princeton)CCDC25
Genetics Home Reference (NIH)CCDC25
Genomic and cartography
GoldenPath hg19 (UCSC)CCDC25  -     chr8:27590833-27630170 -  8p21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCDC25  -     8p21.1   [Description]    (hg38-Dec_2013)
EnsemblCCDC25 - 8p21.1 [CytoView hg19]  CCDC25 - 8p21.1 [CytoView hg38]
Mapping of homologs : NCBICCDC25 [Mapview hg19]  CCDC25 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001715 AK027900 AK292875 AK294848 AK311437
RefSeq transcript (Entrez)NM_001304529 NM_001304530 NM_001304532 NM_018246
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_167187 NW_004929337
Consensus coding sequences : CCDS (NCBI)CCDC25
Cluster EST : UnigeneHs.445512 [ NCBI ]
CGAP (NCI)Hs.445512
Alternative Splicing GalleryENSG00000147419
Gene ExpressionCCDC25 [ NCBI-GEO ]   CCDC25 [ EBI - ARRAY_EXPRESS ]   CCDC25 [ SEEK ]   CCDC25 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC25 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55246
GTEX Portal (Tissue expression)CCDC25
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86WR0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86WR0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86WR0
Splice isoforms : SwissVarQ86WR0
PhosPhoSitePlusQ86WR0
Domains : Interpro (EBI)DUF814   
Domain families : Pfam (Sanger)DUF814 (PF05670)   
Domain families : Pfam (NCBI)pfam05670   
Conserved Domain (NCBI)CCDC25
DMDM Disease mutations55246
Blocks (Seattle)CCDC25
SuperfamilyQ86WR0
Human Protein AtlasENSG00000147419
Peptide AtlasQ86WR0
HPRD07705
IPIIPI00396174   IPI00980577   IPI00793427   IPI00477220   IPI00791694   IPI01010069   
Protein Interaction databases
DIP (DOE-UCLA)Q86WR0
IntAct (EBI)Q86WR0
FunCoupENSG00000147419
BioGRIDCCDC25
STRING (EMBL)CCDC25
ZODIACCCDC25
Ontologies - Pathways
QuickGOQ86WR0
Ontology : AmiGOprotein binding  extracellular exosome  
Ontology : EGO-EBIprotein binding  extracellular exosome  
NDEx NetworkCCDC25
Atlas of Cancer Signalling NetworkCCDC25
Wikipedia pathwaysCCDC25
Orthology - Evolution
OrthoDB55246
GeneTree (enSembl)ENSG00000147419
Phylogenetic Trees/Animal Genes : TreeFamCCDC25
HOVERGENQ86WR0
HOGENOMQ86WR0
Homologs : HomoloGeneCCDC25
Homology/Alignments : Family Browser (UCSC)CCDC25
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC25 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC25
dbVarCCDC25
ClinVarCCDC25
1000_GenomesCCDC25 
Exome Variant ServerCCDC25
ExAC (Exome Aggregation Consortium)CCDC25 (select the gene name)
Genetic variants : HAPMAP55246
Genomic Variants (DGV)CCDC25 [DGVbeta]
DECIPHER (Syndromes)8:27590833-27630170  ENSG00000147419
CONAN: Copy Number AnalysisCCDC25 
Mutations
ICGC Data PortalCCDC25 
TCGA Data PortalCCDC25 
Broad Tumor PortalCCDC25
OASIS PortalCCDC25 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC25  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC25
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC25
DgiDB (Drug Gene Interaction Database)CCDC25
DoCM (Curated mutations)CCDC25 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC25 (select a term)
intoGenCCDC25
Cancer3DCCDC25(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC25
Genetic Testing Registry CCDC25
NextProtQ86WR0 [Medical]
TSGene55246
GENETestsCCDC25
Huge Navigator CCDC25 [HugePedia]
snp3D : Map Gene to Disease55246
BioCentury BCIQCCDC25
ClinGenCCDC25
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55246
Chemical/Pharm GKB GenePA142672183
Clinical trialCCDC25
Miscellaneous
canSAR (ICR)CCDC25 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC25
EVEXCCDC25
GoPubMedCCDC25
iHOPCCDC25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:58:34 CET 2017

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