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CCDC26 (CCDC26 long non-coding RNA)

Identity

Alias_namescoiled-coil domain containing 26
Alias_symbol (synonym)MGC27434
RAM
Other alias
HGNC (Hugo) CCDC26
LocusID (NCBI) 137196
Atlas_Id 51217
Location 8q24.21  [Link to chromosome band 8q24]
Location_base_pair Starts at 130363940 and ends at 130692485 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC26   28416
Cards
Entrez_Gene (NCBI)CCDC26  137196  CCDC26 long non-coding RNA
AliasesRAM
GeneCards (Weizmann)CCDC26
Ensembl hg19 (Hinxton)ENSG00000229140 [Gene_View]  chr8:130363940-130692485 [Contig_View]  CCDC26 [Vega]
Ensembl hg38 (Hinxton)ENSG00000229140 [Gene_View]  chr8:130363940-130692485 [Contig_View]  CCDC26 [Vega]
ICGC DataPortalENSG00000229140
TCGA cBioPortalCCDC26
AceView (NCBI)CCDC26
Genatlas (Paris)CCDC26
WikiGenes137196
SOURCE (Princeton)CCDC26
Genetics Home Reference (NIH)CCDC26
Genomic and cartography
GoldenPath hg19 (UCSC)CCDC26  -     chr8:130363940-130692485 -  8q24.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCDC26  -     8q24.21   [Description]    (hg38-Dec_2013)
EnsemblCCDC26 - 8q24.21 [CytoView hg19]  CCDC26 - 8q24.21 [CytoView hg38]
Mapping of homologs : NCBICCDC26 [Mapview hg19]  CCDC26 [Mapview hg38]
OMIM613040   
Gene and transcription
Genbank (Entrez)BC026098 BC070152 BG393734 BG532915 BU186641
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008046 NW_004929340
Consensus coding sequences : CCDS (NCBI)CCDC26
Cluster EST : UnigeneHs.679457 [ NCBI ]
CGAP (NCI)Hs.679457
Alternative Splicing GalleryENSG00000229140
Gene ExpressionCCDC26 [ NCBI-GEO ]   CCDC26 [ EBI - ARRAY_EXPRESS ]   CCDC26 [ SEEK ]   CCDC26 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC26 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)137196
GTEX Portal (Tissue expression)CCDC26
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TAB7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TAB7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TAB7
Splice isoforms : SwissVarQ8TAB7
PhosPhoSitePlusQ8TAB7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC26
DMDM Disease mutations137196
Blocks (Seattle)CCDC26
SuperfamilyQ8TAB7
Human Protein AtlasENSG00000229140
Peptide AtlasQ8TAB7
HPRD14523
IPIIPI00152028   
Protein Interaction databases
DIP (DOE-UCLA)Q8TAB7
IntAct (EBI)Q8TAB7
FunCoupENSG00000229140
BioGRIDCCDC26
STRING (EMBL)CCDC26
ZODIACCCDC26
Ontologies - Pathways
QuickGOQ8TAB7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC26
Atlas of Cancer Signalling NetworkCCDC26
Wikipedia pathwaysCCDC26
Orthology - Evolution
OrthoDB137196
GeneTree (enSembl)ENSG00000229140
Phylogenetic Trees/Animal Genes : TreeFamCCDC26
HOVERGENQ8TAB7
HOGENOMQ8TAB7
Homologs : HomoloGeneCCDC26
Homology/Alignments : Family Browser (UCSC)CCDC26
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC26 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC26
dbVarCCDC26
ClinVarCCDC26
1000_GenomesCCDC26 
Exome Variant ServerCCDC26
ExAC (Exome Aggregation Consortium)CCDC26 (select the gene name)
Genetic variants : HAPMAP137196
Genomic Variants (DGV)CCDC26 [DGVbeta]
DECIPHER (Syndromes)8:130363940-130692485  ENSG00000229140
CONAN: Copy Number AnalysisCCDC26 
Mutations
ICGC Data PortalCCDC26 
TCGA Data PortalCCDC26 
Broad Tumor PortalCCDC26
OASIS PortalCCDC26 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCCDC26
BioMutasearch CCDC26
DgiDB (Drug Gene Interaction Database)CCDC26
DoCM (Curated mutations)CCDC26 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC26 (select a term)
intoGenCCDC26
Cancer3DCCDC26(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613040   
Orphanet
MedgenCCDC26
Genetic Testing Registry CCDC26
NextProtQ8TAB7 [Medical]
TSGene137196
GENETestsCCDC26
Huge Navigator CCDC26 [HugePedia]
snp3D : Map Gene to Disease137196
BioCentury BCIQCCDC26
ClinGenCCDC26
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD137196
Chemical/Pharm GKB GenePA142672184
Clinical trialCCDC26
Miscellaneous
canSAR (ICR)CCDC26 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC26
EVEXCCDC26
GoPubMedCCDC26
iHOPCCDC26
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:55:14 CEST 2017

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