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CCDC27 (coiled-coil domain containing 27)

Identity

Alias_symbol (synonym)FLJ32825
Other alias-
HGNC (Hugo) CCDC27
LocusID (NCBI) 148870
Atlas_Id 61536
Location 1p36.32  [Link to chromosome band 1p36]
Location_base_pair Starts at 3752401 and ends at 3771645 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC27   26546
Cards
Entrez_Gene (NCBI)CCDC27  148870  coiled-coil domain containing 27
Aliases
GeneCards (Weizmann)CCDC27
Ensembl hg19 (Hinxton)ENSG00000162592 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162592 [Gene_View]  chr1:3752401-3771645 [Contig_View]  CCDC27 [Vega]
ICGC DataPortalENSG00000162592
TCGA cBioPortalCCDC27
AceView (NCBI)CCDC27
Genatlas (Paris)CCDC27
WikiGenes148870
SOURCE (Princeton)CCDC27
Genetics Home Reference (NIH)CCDC27
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC27  -     chr1:3752401-3771645 +  1p36.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC27  -     1p36.32   [Description]    (hg19-Feb_2009)
EnsemblCCDC27 - 1p36.32 [CytoView hg19]  CCDC27 - 1p36.32 [CytoView hg38]
Mapping of homologs : NCBICCDC27 [Mapview hg19]  CCDC27 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057387 BC112108 BC112112 DB048639
RefSeq transcript (Entrez)NM_152492
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC27
Cluster EST : UnigeneHs.348700 [ NCBI ]
CGAP (NCI)Hs.348700
Alternative Splicing GalleryENSG00000162592
Gene ExpressionCCDC27 [ NCBI-GEO ]   CCDC27 [ EBI - ARRAY_EXPRESS ]   CCDC27 [ SEEK ]   CCDC27 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC27 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148870
GTEX Portal (Tissue expression)CCDC27
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2M243   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2M243  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2M243
Splice isoforms : SwissVarQ2M243
PhosPhoSitePlusQ2M243
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC27
DMDM Disease mutations148870
Blocks (Seattle)CCDC27
SuperfamilyQ2M243
Human Protein AtlasENSG00000162592
Peptide AtlasQ2M243
HPRD08141
IPIIPI00065310   
Protein Interaction databases
DIP (DOE-UCLA)Q2M243
IntAct (EBI)Q2M243
FunCoupENSG00000162592
BioGRIDCCDC27
STRING (EMBL)CCDC27
ZODIACCCDC27
Ontologies - Pathways
QuickGOQ2M243
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC27
Atlas of Cancer Signalling NetworkCCDC27
Wikipedia pathwaysCCDC27
Orthology - Evolution
OrthoDB148870
GeneTree (enSembl)ENSG00000162592
Phylogenetic Trees/Animal Genes : TreeFamCCDC27
HOVERGENQ2M243
HOGENOMQ2M243
Homologs : HomoloGeneCCDC27
Homology/Alignments : Family Browser (UCSC)CCDC27
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC27 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC27
dbVarCCDC27
ClinVarCCDC27
1000_GenomesCCDC27 
Exome Variant ServerCCDC27
ExAC (Exome Aggregation Consortium)CCDC27 (select the gene name)
Genetic variants : HAPMAP148870
Genomic Variants (DGV)CCDC27 [DGVbeta]
DECIPHERCCDC27 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC27 
Mutations
ICGC Data PortalCCDC27 
TCGA Data PortalCCDC27 
Broad Tumor PortalCCDC27
OASIS PortalCCDC27 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC27  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC27
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC27
DgiDB (Drug Gene Interaction Database)CCDC27
DoCM (Curated mutations)CCDC27 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC27 (select a term)
intoGenCCDC27
Cancer3DCCDC27(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC27
Genetic Testing Registry CCDC27
NextProtQ2M243 [Medical]
TSGene148870
GENETestsCCDC27
Huge Navigator CCDC27 [HugePedia]
snp3D : Map Gene to Disease148870
BioCentury BCIQCCDC27
ClinGenCCDC27
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD148870
Chemical/Pharm GKB GenePA142672185
Clinical trialCCDC27
Miscellaneous
canSAR (ICR)CCDC27 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC27
EVEXCCDC27
GoPubMedCCDC27
iHOPCCDC27
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:04:52 CEST 2017

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