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CCDC28A (coiled-coil domain containing 28A)

Identity

Alias_namesC6orf80
chromosome 6 open reading frame 80
Alias_symbol (synonym)CCRL1AP
DKFZp586D0623
Other alias
HGNC (Hugo) CCDC28A
LocusID (NCBI) 25901
Atlas_Id 42964
Location 6q24.1  [Link to chromosome band 6q24]
Location_base_pair Starts at 138773520 and ends at 138793319 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCDC28A (6q24.1) / IL22RA2 (6q23.3)NUP98 (11p15.4) / CCDC28A (6q24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(6;11)(q24.1;p15.5) NUP98/CCDC28A
t(6;11)(q24;p15) CCDC28A/NUP98


External links

Nomenclature
HGNC (Hugo)CCDC28A   21098
Cards
Entrez_Gene (NCBI)CCDC28A  25901  coiled-coil domain containing 28A
AliasesC6orf80; CCRL1AP
GeneCards (Weizmann)CCDC28A
Ensembl hg19 (Hinxton)ENSG00000024862 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000024862 [Gene_View]  ENSG00000024862 [Sequence]  chr6:138773520-138793319 [Contig_View]  CCDC28A [Vega]
ICGC DataPortalENSG00000024862
TCGA cBioPortalCCDC28A
AceView (NCBI)CCDC28A
Genatlas (Paris)CCDC28A
WikiGenes25901
SOURCE (Princeton)CCDC28A
Genetics Home Reference (NIH)CCDC28A
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC28A  -     chr6:138773520-138793319 +  6q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC28A  -     6q24.1   [Description]    (hg19-Feb_2009)
EnsemblCCDC28A - 6q24.1 [CytoView hg19]  CCDC28A - 6q24.1 [CytoView hg38]
Mapping of homologs : NCBICCDC28A [Mapview hg19]  CCDC28A [Mapview hg38]
OMIM615353   
Gene and transcription
Genbank (Entrez)AJ420568 AK300672 AL050197 AY167571 BC000758
RefSeq transcript (Entrez)NM_015439
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC28A
Cluster EST : UnigeneHs.412019 [ NCBI ]
CGAP (NCI)Hs.412019
Alternative Splicing GalleryENSG00000024862
Gene ExpressionCCDC28A [ NCBI-GEO ]   CCDC28A [ EBI - ARRAY_EXPRESS ]   CCDC28A [ SEEK ]   CCDC28A [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC28A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25901
GTEX Portal (Tissue expression)CCDC28A
Human Protein AtlasENSG00000024862-CCDC28A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IWP9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IWP9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IWP9
Splice isoforms : SwissVarQ8IWP9
PhosPhoSitePlusQ8IWP9
Domains : Interpro (EBI)DUF4061   
Domain families : Pfam (Sanger)DUF4061 (PF13270)   
Domain families : Pfam (NCBI)pfam13270   
Conserved Domain (NCBI)CCDC28A
DMDM Disease mutations25901
Blocks (Seattle)CCDC28A
SuperfamilyQ8IWP9
Human Protein Atlas [tissue]ENSG00000024862-CCDC28A [tissue]
Peptide AtlasQ8IWP9
HPRD09857
IPIIPI00217329   IPI00411771   
Protein Interaction databases
DIP (DOE-UCLA)Q8IWP9
IntAct (EBI)Q8IWP9
FunCoupENSG00000024862
BioGRIDCCDC28A
STRING (EMBL)CCDC28A
ZODIACCCDC28A
Ontologies - Pathways
QuickGOQ8IWP9
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkCCDC28A
Atlas of Cancer Signalling NetworkCCDC28A
Wikipedia pathwaysCCDC28A
Orthology - Evolution
OrthoDB25901
GeneTree (enSembl)ENSG00000024862
Phylogenetic Trees/Animal Genes : TreeFamCCDC28A
HOVERGENQ8IWP9
HOGENOMQ8IWP9
Homologs : HomoloGeneCCDC28A
Homology/Alignments : Family Browser (UCSC)CCDC28A
Gene fusions - Rearrangements
Fusion : MitelmanNUP98/CCDC28A [11p15.4/6q24.1]  [t(6;11)(q24;p15)]  
Fusion : QuiverCCDC28A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC28A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC28A
dbVarCCDC28A
ClinVarCCDC28A
1000_GenomesCCDC28A 
Exome Variant ServerCCDC28A
ExAC (Exome Aggregation Consortium)ENSG00000024862
GNOMAD BrowserENSG00000024862
Varsome BrowserCCDC28A
Genetic variants : HAPMAP25901
Genomic Variants (DGV)CCDC28A [DGVbeta]
DECIPHERCCDC28A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC28A 
Mutations
ICGC Data PortalCCDC28A 
TCGA Data PortalCCDC28A 
Broad Tumor PortalCCDC28A
OASIS PortalCCDC28A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC28A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC28A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC28A
DgiDB (Drug Gene Interaction Database)CCDC28A
DoCM (Curated mutations)CCDC28A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC28A (select a term)
intoGenCCDC28A
Cancer3DCCDC28A(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615353   
Orphanet
DisGeNETCCDC28A
MedgenCCDC28A
Genetic Testing Registry CCDC28A
NextProtQ8IWP9 [Medical]
TSGene25901
GENETestsCCDC28A
Target ValidationCCDC28A
Huge Navigator CCDC28A [HugePedia]
snp3D : Map Gene to Disease25901
BioCentury BCIQCCDC28A
ClinGenCCDC28A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25901
Chemical/Pharm GKB GenePA134939277
Clinical trialCCDC28A
Miscellaneous
canSAR (ICR)CCDC28A (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC28A
EVEXCCDC28A
GoPubMedCCDC28A
iHOPCCDC28A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 10:56:07 CET 2018

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