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CCDC28B (coiled-coil domain containing 28B)

Identity

Alias_symbol (synonym)MGC1203
RP4-622L5.5
Other alias-
HGNC (Hugo) CCDC28B
LocusID (NCBI) 79140
Atlas_Id 61537
Location 1p35.2  [Link to chromosome band 1p35]
Location_base_pair Starts at 32200386 and ends at 32205390 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CAP2 (6p22.3) / CCDC28B (1p35.1)CCDC28B (1p35.1) / IQCC (1p35.1)CCDC28B (1p35.1) / PLEKHG1 (6q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC28B   28163
Cards
Entrez_Gene (NCBI)CCDC28B  79140  coiled-coil domain containing 28B
Aliases
GeneCards (Weizmann)CCDC28B
Ensembl hg19 (Hinxton)ENSG00000160050 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160050 [Gene_View]  chr1:32200386-32205390 [Contig_View]  CCDC28B [Vega]
ICGC DataPortalENSG00000160050
TCGA cBioPortalCCDC28B
AceView (NCBI)CCDC28B
Genatlas (Paris)CCDC28B
WikiGenes79140
SOURCE (Princeton)CCDC28B
Genetics Home Reference (NIH)CCDC28B
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC28B  -     chr1:32200386-32205390 +  1p35.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC28B  -     1p35.2   [Description]    (hg19-Feb_2009)
EnsemblCCDC28B - 1p35.2 [CytoView hg19]  CCDC28B - 1p35.2 [CytoView hg38]
Mapping of homologs : NCBICCDC28B [Mapview hg19]  CCDC28B [Mapview hg38]
OMIM209900   610162   
Gene and transcription
Genbank (Entrez)AK092702 AK225113 AK291904 BC002462 BC022848
RefSeq transcript (Entrez)NM_001301011 NM_024296
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC28B
Cluster EST : UnigeneHs.534482 [ NCBI ]
CGAP (NCI)Hs.534482
Alternative Splicing GalleryENSG00000160050
Gene ExpressionCCDC28B [ NCBI-GEO ]   CCDC28B [ EBI - ARRAY_EXPRESS ]   CCDC28B [ SEEK ]   CCDC28B [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC28B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79140
GTEX Portal (Tissue expression)CCDC28B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BUN5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BUN5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BUN5
Splice isoforms : SwissVarQ9BUN5
PhosPhoSitePlusQ9BUN5
Domains : Interpro (EBI)DUF4061   
Domain families : Pfam (Sanger)DUF4061 (PF13270)   
Domain families : Pfam (NCBI)pfam13270   
Conserved Domain (NCBI)CCDC28B
DMDM Disease mutations79140
Blocks (Seattle)CCDC28B
SuperfamilyQ9BUN5
Human Protein AtlasENSG00000160050
Peptide AtlasQ9BUN5
HPRD14422
IPIIPI00382868   IPI00013273   IPI00981028   IPI00981670   
Protein Interaction databases
DIP (DOE-UCLA)Q9BUN5
IntAct (EBI)Q9BUN5
FunCoupENSG00000160050
BioGRIDCCDC28B
STRING (EMBL)CCDC28B
ZODIACCCDC28B
Ontologies - Pathways
QuickGOQ9BUN5
Ontology : AmiGOprotein binding  cytoplasm  centrosome  cilium assembly  
Ontology : EGO-EBIprotein binding  cytoplasm  centrosome  cilium assembly  
NDEx NetworkCCDC28B
Atlas of Cancer Signalling NetworkCCDC28B
Wikipedia pathwaysCCDC28B
Orthology - Evolution
OrthoDB79140
GeneTree (enSembl)ENSG00000160050
Phylogenetic Trees/Animal Genes : TreeFamCCDC28B
HOVERGENQ9BUN5
HOGENOMQ9BUN5
Homologs : HomoloGeneCCDC28B
Homology/Alignments : Family Browser (UCSC)CCDC28B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC28B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC28B
dbVarCCDC28B
ClinVarCCDC28B
1000_GenomesCCDC28B 
Exome Variant ServerCCDC28B
ExAC (Exome Aggregation Consortium)CCDC28B (select the gene name)
Genetic variants : HAPMAP79140
Genomic Variants (DGV)CCDC28B [DGVbeta]
DECIPHERCCDC28B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC28B 
Mutations
ICGC Data PortalCCDC28B 
TCGA Data PortalCCDC28B 
Broad Tumor PortalCCDC28B
OASIS PortalCCDC28B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC28B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC28B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC28B
DgiDB (Drug Gene Interaction Database)CCDC28B
DoCM (Curated mutations)CCDC28B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC28B (select a term)
intoGenCCDC28B
Cancer3DCCDC28B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM209900    610162   
Orphanet
MedgenCCDC28B
Genetic Testing Registry CCDC28B
NextProtQ9BUN5 [Medical]
TSGene79140
GENETestsCCDC28B
Target ValidationCCDC28B
Huge Navigator CCDC28B [HugePedia]
snp3D : Map Gene to Disease79140
BioCentury BCIQCCDC28B
ClinGenCCDC28B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79140
Chemical/Pharm GKB GenePA142672186
Clinical trialCCDC28B
Miscellaneous
canSAR (ICR)CCDC28B (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC28B
EVEXCCDC28B
GoPubMedCCDC28B
iHOPCCDC28B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:11 CEST 2017

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