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CCDC3 (coiled-coil domain containing 3)

Identity

Other alias-
HGNC (Hugo) CCDC3
LocusID (NCBI) 83643
Atlas_Id 56822
Location 10p13  [Link to chromosome band 10p13]
Location_base_pair Starts at 12896625 and ends at 13099773 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
USP6NL (10p14) / CCDC3 (10p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC3   23813
Cards
Entrez_Gene (NCBI)CCDC3  83643  coiled-coil domain containing 3
Aliases
GeneCards (Weizmann)CCDC3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:12896625-13099773 [Contig_View]  CCDC3 [Vega]
TCGA cBioPortalCCDC3
AceView (NCBI)CCDC3
Genatlas (Paris)CCDC3
WikiGenes83643
SOURCE (Princeton)CCDC3
Genetics Home Reference (NIH)CCDC3
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC3  -     chr10:12896625-13099773 -  10p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC3  -     10p13   [Description]    (hg19-Feb_2009)
EnsemblCCDC3 - 10p13 [CytoView hg19]  CCDC3 - 10p13 [CytoView hg38]
Mapping of homologs : NCBICCDC3 [Mapview hg19]  CCDC3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF190154 AK024578 AK095792 AK123393 AK124195
RefSeq transcript (Entrez)NM_001282658 NM_031455
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC3
Cluster EST : UnigeneHs.738531 [ NCBI ]
CGAP (NCI)Hs.738531
Gene ExpressionCCDC3 [ NCBI-GEO ]   CCDC3 [ EBI - ARRAY_EXPRESS ]   CCDC3 [ SEEK ]   CCDC3 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83643
GTEX Portal (Tissue expression)CCDC3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQI4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQI4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQI4
Splice isoforms : SwissVarQ9BQI4
PhosPhoSitePlusQ9BQI4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC3
DMDM Disease mutations83643
Blocks (Seattle)CCDC3
SuperfamilyQ9BQI4
Peptide AtlasQ9BQI4
IPIIPI00027800   IPI00385079   IPI00640521   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQI4
IntAct (EBI)Q9BQI4
BioGRIDCCDC3
STRING (EMBL)CCDC3
ZODIACCCDC3
Ontologies - Pathways
QuickGOQ9BQI4
Ontology : AmiGOextracellular region  endoplasmic reticulum  negative regulation of tumor necrosis factor-mediated signaling pathway  positive regulation of fat cell differentiation  positive regulation of lipid biosynthetic process  
Ontology : EGO-EBIextracellular region  endoplasmic reticulum  negative regulation of tumor necrosis factor-mediated signaling pathway  positive regulation of fat cell differentiation  positive regulation of lipid biosynthetic process  
NDEx NetworkCCDC3
Atlas of Cancer Signalling NetworkCCDC3
Wikipedia pathwaysCCDC3
Orthology - Evolution
OrthoDB83643
Phylogenetic Trees/Animal Genes : TreeFamCCDC3
HOVERGENQ9BQI4
HOGENOMQ9BQI4
Homologs : HomoloGeneCCDC3
Homology/Alignments : Family Browser (UCSC)CCDC3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC3
dbVarCCDC3
ClinVarCCDC3
1000_GenomesCCDC3 
Exome Variant ServerCCDC3
ExAC (Exome Aggregation Consortium)CCDC3 (select the gene name)
Genetic variants : HAPMAP83643
Genomic Variants (DGV)CCDC3 [DGVbeta]
DECIPHERCCDC3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC3 
Mutations
ICGC Data PortalCCDC3 
TCGA Data PortalCCDC3 
Broad Tumor PortalCCDC3
OASIS PortalCCDC3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC3
BioMutasearch CCDC3
DgiDB (Drug Gene Interaction Database)CCDC3
DoCM (Curated mutations)CCDC3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC3 (select a term)
intoGenCCDC3
Cancer3DCCDC3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC3
Genetic Testing Registry CCDC3
NextProtQ9BQI4 [Medical]
TSGene83643
GENETestsCCDC3
Target ValidationCCDC3
Huge Navigator CCDC3 [HugePedia]
snp3D : Map Gene to Disease83643
BioCentury BCIQCCDC3
ClinGenCCDC3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83643
Chemical/Pharm GKB GenePA134863738
Clinical trialCCDC3
Miscellaneous
canSAR (ICR)CCDC3 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC3
EVEXCCDC3
GoPubMedCCDC3
iHOPCCDC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:26:58 CEST 2017

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