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CCDC33 (coiled-coil domain containing 33)

Identity

Alias_symbol (synonym)FLJ32855
CT61
Other aliasHP11097
HGNC (Hugo) CCDC33
LocusID (NCBI) 80125
Atlas_Id 56079
Location 15q24.1  [Link to chromosome band 15q24]
Location_base_pair Starts at 74610882 and ends at 74628482 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC33   26552
Cards
Entrez_Gene (NCBI)CCDC33  80125  coiled-coil domain containing 33
AliasesCT61; HP11097
GeneCards (Weizmann)CCDC33
Ensembl hg19 (Hinxton)ENSG00000140481 [Gene_View]  chr15:74610882-74628482 [Contig_View]  CCDC33 [Vega]
Ensembl hg38 (Hinxton)ENSG00000140481 [Gene_View]  chr15:74610882-74628482 [Contig_View]  CCDC33 [Vega]
ICGC DataPortalENSG00000140481
TCGA cBioPortalCCDC33
AceView (NCBI)CCDC33
Genatlas (Paris)CCDC33
WikiGenes80125
SOURCE (Princeton)CCDC33
Genetics Home Reference (NIH)CCDC33
Genomic and cartography
GoldenPath hg19 (UCSC)CCDC33  -     chr15:74610882-74628482 +  15q24.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCDC33  -     15q24.1   [Description]    (hg38-Dec_2013)
EnsemblCCDC33 - 15q24.1 [CytoView hg19]  CCDC33 - 15q24.1 [CytoView hg38]
Mapping of homologs : NCBICCDC33 [Mapview hg19]  CCDC33 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001287181 NM_025055 NM_182791
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC33
Cluster EST : UnigeneHs.646536 [ NCBI ]
CGAP (NCI)Hs.646536
Alternative Splicing GalleryENSG00000140481
Gene ExpressionCCDC33 [ NCBI-GEO ]   CCDC33 [ EBI - ARRAY_EXPRESS ]   CCDC33 [ SEEK ]   CCDC33 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC33 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80125
GTEX Portal (Tissue expression)CCDC33
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N5R6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N5R6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N5R6
Splice isoforms : SwissVarQ8N5R6
PhosPhoSitePlusQ8N5R6
Domains : Interpro (EBI)C2_dom   
Domain families : Pfam (Sanger)C2 (PF00168)   
Domain families : Pfam (NCBI)pfam00168   
Conserved Domain (NCBI)CCDC33
DMDM Disease mutations80125
Blocks (Seattle)CCDC33
SuperfamilyQ8N5R6
Human Protein AtlasENSG00000140481
Peptide AtlasQ8N5R6
HPRD09959
IPIIPI00869100   IPI00177882   IPI00152152   IPI00941163   IPI00376874   IPI00984535   
Protein Interaction databases
DIP (DOE-UCLA)Q8N5R6
IntAct (EBI)Q8N5R6
FunCoupENSG00000140481
BioGRIDCCDC33
STRING (EMBL)CCDC33
ZODIACCCDC33
Ontologies - Pathways
QuickGOQ8N5R6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC33
Atlas of Cancer Signalling NetworkCCDC33
Wikipedia pathwaysCCDC33
Orthology - Evolution
OrthoDB80125
GeneTree (enSembl)ENSG00000140481
Phylogenetic Trees/Animal Genes : TreeFamCCDC33
HOVERGENQ8N5R6
HOGENOMQ8N5R6
Homologs : HomoloGeneCCDC33
Homology/Alignments : Family Browser (UCSC)CCDC33
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC33 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC33
dbVarCCDC33
ClinVarCCDC33
1000_GenomesCCDC33 
Exome Variant ServerCCDC33
ExAC (Exome Aggregation Consortium)CCDC33 (select the gene name)
Genetic variants : HAPMAP80125
Genomic Variants (DGV)CCDC33 [DGVbeta]
DECIPHER (Syndromes)15:74610882-74628482  ENSG00000140481
CONAN: Copy Number AnalysisCCDC33 
Mutations
ICGC Data PortalCCDC33 
TCGA Data PortalCCDC33 
Broad Tumor PortalCCDC33
OASIS PortalCCDC33 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC33  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC33
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC33
DgiDB (Drug Gene Interaction Database)CCDC33
DoCM (Curated mutations)CCDC33 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC33 (select a term)
intoGenCCDC33
Cancer3DCCDC33(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC33
Genetic Testing Registry CCDC33
NextProtQ8N5R6 [Medical]
TSGene80125
GENETestsCCDC33
Huge Navigator CCDC33 [HugePedia]
snp3D : Map Gene to Disease80125
BioCentury BCIQCCDC33
ClinGenCCDC33
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80125
Chemical/Pharm GKB GenePA142672188
Clinical trialCCDC33
Miscellaneous
canSAR (ICR)CCDC33 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC33
EVEXCCDC33
GoPubMedCCDC33
iHOPCCDC33
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:55:15 CEST 2017

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