Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CCDC34 (coiled-coil domain containing 34)

Identity

Alias_symbol (synonym)NY-REN-41
L15
RAMA3
Other alias
HGNC (Hugo) CCDC34
LocusID (NCBI) 91057
Atlas_Id 55848
Location 11p14.1  [Link to chromosome band 11p14]
Location_base_pair Starts at 27348872 and ends at 27363248 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCDC34 (11p14.1) / CCDC34 (11p14.1)CCDC34 (11p14.1) / LGR4 (11p14.1)SORBS2 (4q35.1) / CCDC34 (11p14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CCDC34   25079
Cards
Entrez_Gene (NCBI)CCDC34  91057  coiled-coil domain containing 34
AliasesL15; NY-REN-41; RAMA3
GeneCards (Weizmann)CCDC34
Ensembl hg19 (Hinxton)ENSG00000109881 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000109881 [Gene_View]  ENSG00000109881 [Sequence]  chr11:27348872-27363248 [Contig_View]  CCDC34 [Vega]
ICGC DataPortalENSG00000109881
TCGA cBioPortalCCDC34
AceView (NCBI)CCDC34
Genatlas (Paris)CCDC34
WikiGenes91057
SOURCE (Princeton)CCDC34
Genetics Home Reference (NIH)CCDC34
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC34  -     chr11:27348872-27363248 -  11p14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC34  -     11p14.1   [Description]    (hg19-Feb_2009)
EnsemblCCDC34 - 11p14.1 [CytoView hg19]  CCDC34 - 11p14.1 [CytoView hg38]
Mapping of homologs : NCBICCDC34 [Mapview hg19]  CCDC34 [Mapview hg38]
OMIM612324   
Gene and transcription
Genbank (Entrez)AF155108 AF301222 AF382034 AK308494 AK313358
RefSeq transcript (Entrez)NM_030771 NM_080654
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC34
Cluster EST : UnigeneHs.143733 [ NCBI ]
CGAP (NCI)Hs.143733
Alternative Splicing GalleryENSG00000109881
Gene ExpressionCCDC34 [ NCBI-GEO ]   CCDC34 [ EBI - ARRAY_EXPRESS ]   CCDC34 [ SEEK ]   CCDC34 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC34 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91057
GTEX Portal (Tissue expression)CCDC34
Human Protein AtlasENSG00000109881-CCDC34 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96HJ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96HJ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96HJ3
Splice isoforms : SwissVarQ96HJ3
PhosPhoSitePlusQ96HJ3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC34
DMDM Disease mutations91057
Blocks (Seattle)CCDC34
SuperfamilyQ96HJ3
Human Protein Atlas [tissue]ENSG00000109881-CCDC34 [tissue]
Peptide AtlasQ96HJ3
HPRD14868
IPIIPI00604666   IPI00063120   IPI00001182   
Protein Interaction databases
DIP (DOE-UCLA)Q96HJ3
IntAct (EBI)Q96HJ3
FunCoupENSG00000109881
BioGRIDCCDC34
STRING (EMBL)CCDC34
ZODIACCCDC34
Ontologies - Pathways
QuickGOQ96HJ3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC34
Atlas of Cancer Signalling NetworkCCDC34
Wikipedia pathwaysCCDC34
Orthology - Evolution
OrthoDB91057
GeneTree (enSembl)ENSG00000109881
Phylogenetic Trees/Animal Genes : TreeFamCCDC34
HOVERGENQ96HJ3
HOGENOMQ96HJ3
Homologs : HomoloGeneCCDC34
Homology/Alignments : Family Browser (UCSC)CCDC34
Gene fusions - Rearrangements
Fusion : QuiverCCDC34
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC34 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC34
dbVarCCDC34
ClinVarCCDC34
1000_GenomesCCDC34 
Exome Variant ServerCCDC34
ExAC (Exome Aggregation Consortium)ENSG00000109881
GNOMAD BrowserENSG00000109881
Varsome BrowserCCDC34
Genetic variants : HAPMAP91057
Genomic Variants (DGV)CCDC34 [DGVbeta]
DECIPHERCCDC34 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC34 
Mutations
ICGC Data PortalCCDC34 
TCGA Data PortalCCDC34 
Broad Tumor PortalCCDC34
OASIS PortalCCDC34 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC34  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC34
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC34
DgiDB (Drug Gene Interaction Database)CCDC34
DoCM (Curated mutations)CCDC34 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC34 (select a term)
intoGenCCDC34
Cancer3DCCDC34(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612324   
Orphanet
DisGeNETCCDC34
MedgenCCDC34
Genetic Testing Registry CCDC34
NextProtQ96HJ3 [Medical]
TSGene91057
GENETestsCCDC34
Target ValidationCCDC34
Huge Navigator CCDC34 [HugePedia]
snp3D : Map Gene to Disease91057
BioCentury BCIQCCDC34
ClinGenCCDC34
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91057
Chemical/Pharm GKB GenePA142672189
Clinical trialCCDC34
Miscellaneous
canSAR (ICR)CCDC34 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC34
EVEXCCDC34
GoPubMedCCDC34
iHOPCCDC34
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Aug 27 11:13:27 CEST 2018
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.