Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CCDC36 (coiled-coil domain containing 36)

Identity

Alias (NCBI)CT74
HGNC (Hugo) CCDC36
HGNC Alias symbFLJ25320
CT74
HGNC Alias namecancer/testis antigen 74
LocusID (NCBI) 339834
Atlas_Id 61541
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 49198428 and ends at 49258104 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCDC36 (3p21.31) / NMNAT3 (3q23)CCDC36 (3p21.31) / PRELP (1q32.1)NFE2L1 (17q21.32) / CCDC36 (3p21.31)
PRELP (1q32.1) / CCDC36 (3p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC36   27945
Cards
Entrez_Gene (NCBI)CCDC36  339834  coiled-coil domain containing 36
AliasesCT74
GeneCards (Weizmann)CCDC36
Ensembl hg19 (Hinxton)ENSG00000173421 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173421 [Gene_View]  ENSG00000173421 [Sequence]  chr3:49198428-49258104 [Contig_View]  CCDC36 [Vega]
ICGC DataPortalENSG00000173421
TCGA cBioPortalCCDC36
AceView (NCBI)CCDC36
Genatlas (Paris)CCDC36
WikiGenes339834
SOURCE (Princeton)CCDC36
Genetics Home Reference (NIH)CCDC36
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC36  -     chr3:49198428-49258104 +  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC36  -     3p21.31   [Description]    (hg19-Feb_2009)
GoldenPathCCDC36 - 3p21.31 [CytoView hg19]  CCDC36 - 3p21.31 [CytoView hg38]
ImmunoBaseENSG00000173421
genome Data Viewer NCBICCDC36 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA858032 AK058049 AK303033 BC015057 BC036202
RefSeq transcript (Entrez)NM_001135197 NM_178173
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC36
Alternative Splicing GalleryENSG00000173421
Gene ExpressionCCDC36 [ NCBI-GEO ]   CCDC36 [ EBI - ARRAY_EXPRESS ]   CCDC36 [ SEEK ]   CCDC36 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC36 [ Firebrowse - Broad ]
GenevisibleExpression of CCDC36 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339834
GTEX Portal (Tissue expression)CCDC36
Human Protein AtlasENSG00000173421-CCDC36 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC36
DMDM Disease mutations339834
Blocks (Seattle)CCDC36
Human Protein Atlas [tissue]ENSG00000173421-CCDC36 [tissue]
HPRD14172
IPIIPI00942270   IPI00065121   IPI00790537   
Protein Interaction databases
FunCoupENSG00000173421
BioGRIDCCDC36
STRING (EMBL)CCDC36
ZODIACCCDC36
Ontologies - Pathways
Huge Navigator CCDC36 [HugePedia]
snp3D : Map Gene to Disease339834
BioCentury BCIQCCDC36
ClinGenCCDC36
Clinical trials, drugs, therapy
Protein Interactions : CTD339834
Pharm GKB GenePA142672191
Clinical trialCCDC36
Miscellaneous
canSAR (ICR)CCDC36 (select the gene name)
HarmonizomeCCDC36
DataMed IndexCCDC36
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC36
EVEXCCDC36
GoPubMedCCDC36
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 15:50:49 CEST 2020

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