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CCDC36 (coiled-coil domain containing 36)

Identity

Alias_symbol (synonym)FLJ25320
CT74
Other alias
HGNC (Hugo) CCDC36
LocusID (NCBI) 339834
Atlas_Id 61541
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 49236933 and ends at 49295537 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CCDC36 (3p21.31) / NMNAT3 (3q23)CCDC36 (3p21.31) / PRELP (1q32.1)NFE2L1 (17q21.32) / CCDC36 (3p21.31)
PRELP (1q32.1) / CCDC36 (3p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC36   27945
Cards
Entrez_Gene (NCBI)CCDC36  339834  coiled-coil domain containing 36
AliasesCT74
GeneCards (Weizmann)CCDC36
Ensembl hg19 (Hinxton)ENSG00000173421 [Gene_View]  chr3:49236933-49295537 [Contig_View]  CCDC36 [Vega]
Ensembl hg38 (Hinxton)ENSG00000173421 [Gene_View]  chr3:49236933-49295537 [Contig_View]  CCDC36 [Vega]
ICGC DataPortalENSG00000173421
TCGA cBioPortalCCDC36
AceView (NCBI)CCDC36
Genatlas (Paris)CCDC36
WikiGenes339834
SOURCE (Princeton)CCDC36
Genetics Home Reference (NIH)CCDC36
Genomic and cartography
GoldenPath hg19 (UCSC)CCDC36  -     chr3:49236933-49295537 +  3p21.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCDC36  -     3p21.31   [Description]    (hg38-Dec_2013)
EnsemblCCDC36 - 3p21.31 [CytoView hg19]  CCDC36 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBICCDC36 [Mapview hg19]  CCDC36 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA858032 AK058049 AK303033 BC015057 BC036202
RefSeq transcript (Entrez)NM_001135197 NM_178173
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)CCDC36
Cluster EST : UnigeneHs.631931 [ NCBI ]
CGAP (NCI)Hs.631931
Alternative Splicing GalleryENSG00000173421
Gene ExpressionCCDC36 [ NCBI-GEO ]   CCDC36 [ EBI - ARRAY_EXPRESS ]   CCDC36 [ SEEK ]   CCDC36 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC36 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339834
GTEX Portal (Tissue expression)CCDC36
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYA8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYA8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYA8
Splice isoforms : SwissVarQ8IYA8
PhosPhoSitePlusQ8IYA8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC36
DMDM Disease mutations339834
Blocks (Seattle)CCDC36
SuperfamilyQ8IYA8
Human Protein AtlasENSG00000173421
Peptide AtlasQ8IYA8
HPRD14172
IPIIPI00942270   IPI00065121   IPI00790537   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYA8
IntAct (EBI)Q8IYA8
FunCoupENSG00000173421
BioGRIDCCDC36
STRING (EMBL)CCDC36
ZODIACCCDC36
Ontologies - Pathways
QuickGOQ8IYA8
Ontology : AmiGOpositive regulation of defense response to virus by host  protein binding  
Ontology : EGO-EBIpositive regulation of defense response to virus by host  protein binding  
NDEx NetworkCCDC36
Atlas of Cancer Signalling NetworkCCDC36
Wikipedia pathwaysCCDC36
Orthology - Evolution
OrthoDB339834
GeneTree (enSembl)ENSG00000173421
Phylogenetic Trees/Animal Genes : TreeFamCCDC36
HOVERGENQ8IYA8
HOGENOMQ8IYA8
Homologs : HomoloGeneCCDC36
Homology/Alignments : Family Browser (UCSC)CCDC36
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC36 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC36
dbVarCCDC36
ClinVarCCDC36
1000_GenomesCCDC36 
Exome Variant ServerCCDC36
ExAC (Exome Aggregation Consortium)CCDC36 (select the gene name)
Genetic variants : HAPMAP339834
Genomic Variants (DGV)CCDC36 [DGVbeta]
DECIPHER (Syndromes)3:49236933-49295537  ENSG00000173421
CONAN: Copy Number AnalysisCCDC36 
Mutations
ICGC Data PortalCCDC36 
TCGA Data PortalCCDC36 
Broad Tumor PortalCCDC36
OASIS PortalCCDC36 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC36  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC36
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC36
DgiDB (Drug Gene Interaction Database)CCDC36
DoCM (Curated mutations)CCDC36 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC36 (select a term)
intoGenCCDC36
Cancer3DCCDC36(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC36
Genetic Testing Registry CCDC36
NextProtQ8IYA8 [Medical]
TSGene339834
GENETestsCCDC36
Huge Navigator CCDC36 [HugePedia]
snp3D : Map Gene to Disease339834
BioCentury BCIQCCDC36
ClinGenCCDC36
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339834
Chemical/Pharm GKB GenePA142672191
Clinical trialCCDC36
Miscellaneous
canSAR (ICR)CCDC36 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC36
EVEXCCDC36
GoPubMedCCDC36
iHOPCCDC36
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:58:35 CET 2017

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