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CCDC38 (coiled-coil domain containing 38)

Identity

Alias_symbol (synonym)FLJ40089
Other alias-
HGNC (Hugo) CCDC38
LocusID (NCBI) 120935
Atlas_Id 61543
Location 12q23.1  [Link to chromosome band 12q23]
Location_base_pair Starts at 95867048 and ends at 95942650 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NTN4 (12q22) / CCDC38 (12q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC38   26843
Cards
Entrez_Gene (NCBI)CCDC38  120935  coiled-coil domain containing 38
Aliases
GeneCards (Weizmann)CCDC38
Ensembl hg19 (Hinxton)ENSG00000165972 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165972 [Gene_View]  chr12:95867048-95942650 [Contig_View]  CCDC38 [Vega]
ICGC DataPortalENSG00000165972
TCGA cBioPortalCCDC38
AceView (NCBI)CCDC38
Genatlas (Paris)CCDC38
WikiGenes120935
SOURCE (Princeton)CCDC38
Genetics Home Reference (NIH)CCDC38
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC38  -     chr12:95867048-95942650 -  12q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC38  -     12q23.1   [Description]    (hg19-Feb_2009)
EnsemblCCDC38 - 12q23.1 [CytoView hg19]  CCDC38 - 12q23.1 [CytoView hg38]
Mapping of homologs : NCBICCDC38 [Mapview hg19]  CCDC38 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097408 BC047659 BC095479
RefSeq transcript (Entrez)NM_182496
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC38
Cluster EST : UnigeneHs.210377 [ NCBI ]
CGAP (NCI)Hs.210377
Alternative Splicing GalleryENSG00000165972
Gene ExpressionCCDC38 [ NCBI-GEO ]   CCDC38 [ EBI - ARRAY_EXPRESS ]   CCDC38 [ SEEK ]   CCDC38 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC38 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)120935
GTEX Portal (Tissue expression)CCDC38
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ502W7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ502W7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ502W7
Splice isoforms : SwissVarQ502W7
PhosPhoSitePlusQ502W7
Domains : Interpro (EBI)DUF4200   
Domain families : Pfam (Sanger)DUF4200 (PF13863)   
Domain families : Pfam (NCBI)pfam13863   
Conserved Domain (NCBI)CCDC38
DMDM Disease mutations120935
Blocks (Seattle)CCDC38
SuperfamilyQ502W7
Human Protein AtlasENSG00000165972
Peptide AtlasQ502W7
HPRD08268
IPIIPI00167313   IPI01022770   IPI01022876   IPI01023017   IPI01020695   
Protein Interaction databases
DIP (DOE-UCLA)Q502W7
IntAct (EBI)Q502W7
FunCoupENSG00000165972
BioGRIDCCDC38
STRING (EMBL)CCDC38
ZODIACCCDC38
Ontologies - Pathways
QuickGOQ502W7
Ontology : AmiGOcytoplasm  centrosome  
Ontology : EGO-EBIcytoplasm  centrosome  
NDEx NetworkCCDC38
Atlas of Cancer Signalling NetworkCCDC38
Wikipedia pathwaysCCDC38
Orthology - Evolution
OrthoDB120935
GeneTree (enSembl)ENSG00000165972
Phylogenetic Trees/Animal Genes : TreeFamCCDC38
HOVERGENQ502W7
HOGENOMQ502W7
Homologs : HomoloGeneCCDC38
Homology/Alignments : Family Browser (UCSC)CCDC38
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC38 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC38
dbVarCCDC38
ClinVarCCDC38
1000_GenomesCCDC38 
Exome Variant ServerCCDC38
ExAC (Exome Aggregation Consortium)CCDC38 (select the gene name)
Genetic variants : HAPMAP120935
Genomic Variants (DGV)CCDC38 [DGVbeta]
DECIPHERCCDC38 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC38 
Mutations
ICGC Data PortalCCDC38 
TCGA Data PortalCCDC38 
Broad Tumor PortalCCDC38
OASIS PortalCCDC38 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC38  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC38
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC38
DgiDB (Drug Gene Interaction Database)CCDC38
DoCM (Curated mutations)CCDC38 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC38 (select a term)
intoGenCCDC38
Cancer3DCCDC38(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC38
Genetic Testing Registry CCDC38
NextProtQ502W7 [Medical]
TSGene120935
GENETestsCCDC38
Huge Navigator CCDC38 [HugePedia]
snp3D : Map Gene to Disease120935
BioCentury BCIQCCDC38
ClinGenCCDC38
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD120935
Chemical/Pharm GKB GenePA142672193
Clinical trialCCDC38
Miscellaneous
canSAR (ICR)CCDC38 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC38
EVEXCCDC38
GoPubMedCCDC38
iHOPCCDC38
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:04:53 CEST 2017

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