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CCDC39 (coiled-coil domain containing 39)

Identity

Alias_symbol (synonym)DKFZp434A128
CILD14
FAP59
Other alias
HGNC (Hugo) CCDC39
LocusID (NCBI) 339829
Atlas_Id 54197
Location 3q26.33  [Link to chromosome band 3q26]
Location_base_pair Starts at 180614008 and ends at 180679495 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCDC39 (3q26.33) / MCF2L2 (3q27.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)CCDC39   25244
Cards
Entrez_Gene (NCBI)CCDC39  339829  coiled-coil domain containing 39
AliasesCILD14; FAP59
GeneCards (Weizmann)CCDC39
Ensembl hg19 (Hinxton)ENSG00000145075 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145075 [Gene_View]  chr3:180614008-180679495 [Contig_View]  CCDC39 [Vega]
ICGC DataPortalENSG00000145075
TCGA cBioPortalCCDC39
AceView (NCBI)CCDC39
Genatlas (Paris)CCDC39
WikiGenes339829
SOURCE (Princeton)CCDC39
Genetics Home Reference (NIH)CCDC39
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC39  -     chr3:180614008-180679495 -  3q26.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC39  -     3q26.33   [Description]    (hg19-Feb_2009)
EnsemblCCDC39 - 3q26.33 [CytoView hg19]  CCDC39 - 3q26.33 [CytoView hg38]
Mapping of homologs : NCBICCDC39 [Mapview hg19]  CCDC39 [Mapview hg38]
OMIM613798   613807   
Gene and transcription
Genbank (Entrez)AK304270 AL122120 BG205877 DC399927
RefSeq transcript (Entrez)NM_181426
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC39
Cluster EST : UnigeneHs.712820 [ NCBI ]
CGAP (NCI)Hs.712820
Alternative Splicing GalleryENSG00000145075
Gene ExpressionCCDC39 [ NCBI-GEO ]   CCDC39 [ EBI - ARRAY_EXPRESS ]   CCDC39 [ SEEK ]   CCDC39 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC39 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339829
GTEX Portal (Tissue expression)CCDC39
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UFE4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UFE4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UFE4
Splice isoforms : SwissVarQ9UFE4
PhosPhoSitePlusQ9UFE4
Domains : Interpro (EBI)CCDC39   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC39
DMDM Disease mutations339829
Blocks (Seattle)CCDC39
SuperfamilyQ9UFE4
Human Protein AtlasENSG00000145075
Peptide AtlasQ9UFE4
IPIIPI00790221   IPI00295494   IPI00947548   IPI00947169   IPI00947324   
Protein Interaction databases
DIP (DOE-UCLA)Q9UFE4
IntAct (EBI)Q9UFE4
FunCoupENSG00000145075
BioGRIDCCDC39
STRING (EMBL)CCDC39
ZODIACCCDC39
Ontologies - Pathways
QuickGOQ9UFE4
Ontology : AmiGOheart looping  cilium movement  regulation of cilium beat frequency  cytoplasm  axoneme  flagellated sperm motility  lung development  determination of pancreatic left/right asymmetry  inner dynein arm assembly  motile cilium assembly  cilium-dependent cell motility  epithelial cilium movement involved in determination of left/right asymmetry  axonemal dynein complex assembly  determination of digestive tract left/right asymmetry  determination of liver left/right asymmetry  
Ontology : EGO-EBIheart looping  cilium movement  regulation of cilium beat frequency  cytoplasm  axoneme  flagellated sperm motility  lung development  determination of pancreatic left/right asymmetry  inner dynein arm assembly  motile cilium assembly  cilium-dependent cell motility  epithelial cilium movement involved in determination of left/right asymmetry  axonemal dynein complex assembly  determination of digestive tract left/right asymmetry  determination of liver left/right asymmetry  
NDEx NetworkCCDC39
Atlas of Cancer Signalling NetworkCCDC39
Wikipedia pathwaysCCDC39
Orthology - Evolution
OrthoDB339829
GeneTree (enSembl)ENSG00000145075
Phylogenetic Trees/Animal Genes : TreeFamCCDC39
HOVERGENQ9UFE4
HOGENOMQ9UFE4
Homologs : HomoloGeneCCDC39
Homology/Alignments : Family Browser (UCSC)CCDC39
Gene fusions - Rearrangements
Fusion : MitelmanCCDC39/MCF2L2 [3q26.33/3q27.1]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC39 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC39
dbVarCCDC39
ClinVarCCDC39
1000_GenomesCCDC39 
Exome Variant ServerCCDC39
ExAC (Exome Aggregation Consortium)CCDC39 (select the gene name)
Genetic variants : HAPMAP339829
Genomic Variants (DGV)CCDC39 [DGVbeta]
DECIPHERCCDC39 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC39 
Mutations
ICGC Data PortalCCDC39 
TCGA Data PortalCCDC39 
Broad Tumor PortalCCDC39
OASIS PortalCCDC39 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC39  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC39
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC39
DgiDB (Drug Gene Interaction Database)CCDC39
DoCM (Curated mutations)CCDC39 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC39 (select a term)
intoGenCCDC39
Cancer3DCCDC39(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613798    613807   
Orphanet665   
MedgenCCDC39
Genetic Testing Registry CCDC39
NextProtQ9UFE4 [Medical]
TSGene339829
GENETestsCCDC39
Target ValidationCCDC39
Huge Navigator CCDC39 [HugePedia]
snp3D : Map Gene to Disease339829
BioCentury BCIQCCDC39
ClinGenCCDC39
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339829
Chemical/Pharm GKB GenePA142672194
Clinical trialCCDC39
Miscellaneous
canSAR (ICR)CCDC39 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC39
EVEXCCDC39
GoPubMedCCDC39
iHOPCCDC39
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:48:55 CEST 2017

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