Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CCDC41 (coiled-coil domain containing 41)

Identity

Other namesNY-REN-58
HGNC (Hugo) CCDC41
LocusID (NCBI) 51134
Location 12q22
Location_base_pair Starts at 94702056 and ends at 94853764 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CCDC41   17966
Entrez_Gene (NCBI)CCDC41  51134  coiled-coil domain containing 41
Cards
GeneCards (Weizmann)CCDC41
Ensembl (Hinxton)ENSG00000173588 [Gene_View]  chr12:94702056-94853764 [Contig_View]  CCDC41 [Vega]
AceView (NCBI)CCDC41
Genatlas (Paris)CCDC41
SOURCE (Stanford)NM_001042399 NM_016122
Genomic and cartography
GoldenPath (UCSC)CCDC41  -  12q22   chr12:94702056-94853764 -  12q22   [Description]    (hg19-Feb_2009)
EnsemblCCDC41 - 12q22 [CytoView]
Mapping of homologs : NCBICCDC41 [Mapview]
Gene and transcription
Genbank (Entrez)AF155115 AK056316 AL705616 BC011009 BC032943
RefSeq transcript (SRS)NM_001042399 NM_016122
RefSeq transcript (Entrez)NM_001042399 NM_016122
RefSeq genomic (SRS)AC_000144 NC_000012 NC_018923 NT_029419 NW_001838061 NW_004078075
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NT_029419 NW_001838061 NW_004078075
Consensus coding sequences : CCDS (NCBI)CCDC41
Cluster EST : UnigeneHs.279209 [ SRS ] Hs.279209 [ NCBI ]
CGAP (NCI)Hs.279209
Alternative Splicing : Fast-db (Paris)GSHG0007688
Alternative Splicing GalleryENSG00000173588
Gene ExpressionCCDC41 [ NCBI-GEO ]   CCDC41 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y592 (SRS) Q9Y592 (Uniprot)
NextProtQ9Y592
With graphics : InterProQ9Y592
Splice isoforms : SwissVarQ9Y592(Swissvar)
Related proteins : CluSTrQ9Y592
Domain families : Pfam (SRS)
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM51134
Blocks (Seattle)Q9Y592
Human Protein AtlasENSG00000173588
HPRD14869
IPIIPI00796371   IPI01021576   IPI01021870   IPI00180681   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y592
IntAct (EBI)Q9Y592
FunCoupENSG00000173588
REACTOMECCDC41
Protein Interaction Database51134
BioGRIDCCDC41
InParanoidQ9Y592
Interologous Interaction database Q9Y592
IntegromeDBCCDC41
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CCDC41
SNP (GeneSNP Utah)CCDC41
SNP : HGBaseCCDC41
Genetic variants : HAPMAPCCDC41
Somatic Mutations in Cancer : COSMICCCDC41 
CONAN: Copy Number AnalysisCCDC41 
Mutations and Diseases : HGMDCCDC41
OMIM
GENETests
Disease Genetic AssociationCCDC41
Huge Navigator CCDC41 [HugePedia]  CCDC41 [HugeCancerGEM]
Genomic VariantsCCDC41  CCDC41 [DGVbeta]
snp3D : Map Gene to Disease51134
General knowledge
Homologs : HomoloGeneCCDC41
Homology/Alignments : Family Browser (UCSC)CCDC41
Phylogenetic Trees/Animal Genes : TreeFamCCDC41
Chemical/Protein Interactions : CTD51134
Chemical/Pharm GKB GenePA142672158
Clinical trialCCDC41
Cancer Resource (Charite)ENSG00000173588
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
Other databases
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
PubGeneCCDC41
iHOPCCDC41
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:50:10 CEST 2013
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