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CCDC42 (coiled-coil domain containing 42)

Identity

Alias_symbol (synonym)FLJ32734
CCDC42A
Other alias
HGNC (Hugo) CCDC42
LocusID (NCBI) 146849
Atlas_Id 61545
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 8729928 and ends at 8744836 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC42   26528
Cards
Entrez_Gene (NCBI)CCDC42  146849  coiled-coil domain containing 42
AliasesCCDC42A
GeneCards (Weizmann)CCDC42
Ensembl hg19 (Hinxton)ENSG00000161973 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000161973 [Gene_View]  chr17:8729928-8744836 [Contig_View]  CCDC42 [Vega]
ICGC DataPortalENSG00000161973
TCGA cBioPortalCCDC42
AceView (NCBI)CCDC42
Genatlas (Paris)CCDC42
WikiGenes146849
SOURCE (Princeton)CCDC42
Genetics Home Reference (NIH)CCDC42
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC42  -     chr17:8729928-8744836 -  17p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC42  -     17p13.1   [Description]    (hg19-Feb_2009)
EnsemblCCDC42 - 17p13.1 [CytoView hg19]  CCDC42 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBICCDC42 [Mapview hg19]  CCDC42 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI204372 AK057296 BC029224 CV030241
RefSeq transcript (Entrez)NM_001158261 NM_144681
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC42
Cluster EST : UnigeneHs.121438 [ NCBI ]
CGAP (NCI)Hs.121438
Alternative Splicing GalleryENSG00000161973
Gene ExpressionCCDC42 [ NCBI-GEO ]   CCDC42 [ EBI - ARRAY_EXPRESS ]   CCDC42 [ SEEK ]   CCDC42 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC42 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146849
GTEX Portal (Tissue expression)CCDC42
Human Protein AtlasENSG00000161973-CCDC42 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96M95   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96M95  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96M95
Splice isoforms : SwissVarQ96M95
PhosPhoSitePlusQ96M95
Domains : Interpro (EBI)DUF4200   
Domain families : Pfam (Sanger)DUF4200 (PF13863)   
Domain families : Pfam (NCBI)pfam13863   
Conserved Domain (NCBI)CCDC42
DMDM Disease mutations146849
Blocks (Seattle)CCDC42
SuperfamilyQ96M95
Human Protein Atlas [tissue]ENSG00000161973-CCDC42 [tissue]
Peptide AtlasQ96M95
HPRD08731
IPIIPI00065433   IPI00167050   
Protein Interaction databases
DIP (DOE-UCLA)Q96M95
IntAct (EBI)Q96M95
FunCoupENSG00000161973
BioGRIDCCDC42
STRING (EMBL)CCDC42
ZODIACCCDC42
Ontologies - Pathways
QuickGOQ96M95
Ontology : AmiGOprotein binding  spermatid development  
Ontology : EGO-EBIprotein binding  spermatid development  
NDEx NetworkCCDC42
Atlas of Cancer Signalling NetworkCCDC42
Wikipedia pathwaysCCDC42
Orthology - Evolution
OrthoDB146849
GeneTree (enSembl)ENSG00000161973
Phylogenetic Trees/Animal Genes : TreeFamCCDC42
HOVERGENQ96M95
HOGENOMQ96M95
Homologs : HomoloGeneCCDC42
Homology/Alignments : Family Browser (UCSC)CCDC42
Gene fusions - Rearrangements
Tumor Fusion PortalCCDC42
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC42 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC42
dbVarCCDC42
ClinVarCCDC42
1000_GenomesCCDC42 
Exome Variant ServerCCDC42
ExAC (Exome Aggregation Consortium)ENSG00000161973
GNOMAD BrowserENSG00000161973
Genetic variants : HAPMAP146849
Genomic Variants (DGV)CCDC42 [DGVbeta]
DECIPHERCCDC42 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC42 
Mutations
ICGC Data PortalCCDC42 
TCGA Data PortalCCDC42 
Broad Tumor PortalCCDC42
OASIS PortalCCDC42 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC42  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC42
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC42
DgiDB (Drug Gene Interaction Database)CCDC42
DoCM (Curated mutations)CCDC42 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC42 (select a term)
intoGenCCDC42
Cancer3DCCDC42(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCDC42
MedgenCCDC42
Genetic Testing Registry CCDC42
NextProtQ96M95 [Medical]
TSGene146849
GENETestsCCDC42
Target ValidationCCDC42
Huge Navigator CCDC42 [HugePedia]
snp3D : Map Gene to Disease146849
BioCentury BCIQCCDC42
ClinGenCCDC42
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146849
Chemical/Pharm GKB GenePA142672159
Clinical trialCCDC42
Miscellaneous
canSAR (ICR)CCDC42 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC42
EVEXCCDC42
GoPubMedCCDC42
iHOPCCDC42
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:35:06 CET 2017

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