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CCDC42B (coiled-coil domain containing 42B)

Identity

Other aliasMIA2
HGNC (Hugo) CCDC42B
LocusID (NCBI) 387885
Atlas_Id 61546
Location 12q24.13  [Link to chromosome band 12q24]
Location_base_pair Starts at 113587663 and ends at 113597081 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC42B   37100
Cards
Entrez_Gene (NCBI)CCDC42B  387885  coiled-coil domain containing 42B
AliasesMIA2
GeneCards (Weizmann)CCDC42B
Ensembl hg19 (Hinxton)ENSG00000186710 [Gene_View]  chr12:113587663-113597081 [Contig_View]  CCDC42B [Vega]
Ensembl hg38 (Hinxton)ENSG00000186710 [Gene_View]  chr12:113587663-113597081 [Contig_View]  CCDC42B [Vega]
ICGC DataPortalENSG00000186710
TCGA cBioPortalCCDC42B
AceView (NCBI)CCDC42B
Genatlas (Paris)CCDC42B
WikiGenes387885
SOURCE (Princeton)CCDC42B
Genetics Home Reference (NIH)CCDC42B
Genomic and cartography
GoldenPath hg19 (UCSC)CCDC42B  -     chr12:113587663-113597081 +  12q24.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCDC42B  -     12q24.13   [Description]    (hg38-Dec_2013)
EnsemblCCDC42B - 12q24.13 [CytoView hg19]  CCDC42B - 12q24.13 [CytoView hg38]
Mapping of homologs : NCBICCDC42B [Mapview hg19]  CCDC42B [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001144872
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929385
Consensus coding sequences : CCDS (NCBI)CCDC42B
Cluster EST : UnigeneHs.486856 [ NCBI ]
CGAP (NCI)Hs.486856
Alternative Splicing GalleryENSG00000186710
Gene ExpressionCCDC42B [ NCBI-GEO ]   CCDC42B [ EBI - ARRAY_EXPRESS ]   CCDC42B [ SEEK ]   CCDC42B [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC42B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387885
GTEX Portal (Tissue expression)CCDC42B
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NFT4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NFT4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NFT4
Splice isoforms : SwissVarA6NFT4
PhosPhoSitePlusA6NFT4
Domains : Interpro (EBI)DUF4200   
Domain families : Pfam (Sanger)DUF4200 (PF13863)   
Domain families : Pfam (NCBI)pfam13863   
Conserved Domain (NCBI)CCDC42B
DMDM Disease mutations387885
Blocks (Seattle)CCDC42B
SuperfamilyA6NFT4
Human Protein AtlasENSG00000186710
Peptide AtlasA6NFT4
IPIIPI00374450   IPI01022290   
Protein Interaction databases
DIP (DOE-UCLA)A6NFT4
IntAct (EBI)A6NFT4
FunCoupENSG00000186710
BioGRIDCCDC42B
STRING (EMBL)CCDC42B
ZODIACCCDC42B
Ontologies - Pathways
QuickGOA6NFT4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC42B
Atlas of Cancer Signalling NetworkCCDC42B
Wikipedia pathwaysCCDC42B
Orthology - Evolution
OrthoDB387885
GeneTree (enSembl)ENSG00000186710
Phylogenetic Trees/Animal Genes : TreeFamCCDC42B
HOVERGENA6NFT4
HOGENOMA6NFT4
Homologs : HomoloGeneCCDC42B
Homology/Alignments : Family Browser (UCSC)CCDC42B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC42B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC42B
dbVarCCDC42B
ClinVarCCDC42B
1000_GenomesCCDC42B 
Exome Variant ServerCCDC42B
ExAC (Exome Aggregation Consortium)CCDC42B (select the gene name)
Genetic variants : HAPMAP387885
Genomic Variants (DGV)CCDC42B [DGVbeta]
DECIPHER (Syndromes)12:113587663-113597081  ENSG00000186710
CONAN: Copy Number AnalysisCCDC42B 
Mutations
ICGC Data PortalCCDC42B 
TCGA Data PortalCCDC42B 
Broad Tumor PortalCCDC42B
OASIS PortalCCDC42B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC42B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC42B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC42B
DgiDB (Drug Gene Interaction Database)CCDC42B
DoCM (Curated mutations)CCDC42B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC42B (select a term)
intoGenCCDC42B
Cancer3DCCDC42B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC42B
Genetic Testing Registry CCDC42B
NextProtA6NFT4 [Medical]
TSGene387885
GENETestsCCDC42B
Huge Navigator CCDC42B [HugePedia]
snp3D : Map Gene to Disease387885
BioCentury BCIQCCDC42B
ClinGenCCDC42B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387885
Chemical/Pharm GKB GenePA165512456
Clinical trialCCDC42B
Miscellaneous
canSAR (ICR)CCDC42B (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC42B
EVEXCCDC42B
GoPubMedCCDC42B
iHOPCCDC42B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:58:36 CET 2017

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