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CCDC43 (coiled-coil domain containing 43)

Identity

Alias_symbol (synonym)FLJ31795
Other alias-
HGNC (Hugo) CCDC43
LocusID (NCBI) 124808
Atlas_Id 54198
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 44677437 and ends at 44689797 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCDC43 (17q21.31) / RPL23A (17q11.2)CCDC43 (17q21.31) / YBX2 (17p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC43   26472
Cards
Entrez_Gene (NCBI)CCDC43  124808  coiled-coil domain containing 43
Aliases
GeneCards (Weizmann)CCDC43
Ensembl hg19 (Hinxton)ENSG00000180329 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180329 [Gene_View]  chr17:44677437-44689797 [Contig_View]  CCDC43 [Vega]
ICGC DataPortalENSG00000180329
TCGA cBioPortalCCDC43
AceView (NCBI)CCDC43
Genatlas (Paris)CCDC43
WikiGenes124808
SOURCE (Princeton)CCDC43
Genetics Home Reference (NIH)CCDC43
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC43  -     chr17:44677437-44689797 -  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC43  -     17q21.31   [Description]    (hg19-Feb_2009)
EnsemblCCDC43 - 17q21.31 [CytoView hg19]  CCDC43 - 17q21.31 [CytoView hg38]
Mapping of homologs : NCBICCDC43 [Mapview hg19]  CCDC43 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI073854 AK056357 AK098464 AL833590 BC023298
RefSeq transcript (Entrez)NM_001099225 NM_144609
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC43
Cluster EST : UnigeneHs.579115 [ NCBI ]
CGAP (NCI)Hs.579115
Alternative Splicing GalleryENSG00000180329
Gene ExpressionCCDC43 [ NCBI-GEO ]   CCDC43 [ EBI - ARRAY_EXPRESS ]   CCDC43 [ SEEK ]   CCDC43 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC43 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124808
GTEX Portal (Tissue expression)CCDC43
Human Protein AtlasENSG00000180329-CCDC43 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MW1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MW1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MW1
Splice isoforms : SwissVarQ96MW1
PhosPhoSitePlusQ96MW1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC43
DMDM Disease mutations124808
Blocks (Seattle)CCDC43
SuperfamilyQ96MW1
Human Protein Atlas [tissue]ENSG00000180329-CCDC43 [tissue]
Peptide AtlasQ96MW1
HPRD08107
IPIIPI00852696   IPI00792109   
Protein Interaction databases
DIP (DOE-UCLA)Q96MW1
IntAct (EBI)Q96MW1
FunCoupENSG00000180329
BioGRIDCCDC43
STRING (EMBL)CCDC43
ZODIACCCDC43
Ontologies - Pathways
QuickGOQ96MW1
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkCCDC43
Atlas of Cancer Signalling NetworkCCDC43
Wikipedia pathwaysCCDC43
Orthology - Evolution
OrthoDB124808
GeneTree (enSembl)ENSG00000180329
Phylogenetic Trees/Animal Genes : TreeFamCCDC43
HOVERGENQ96MW1
HOGENOMQ96MW1
Homologs : HomoloGeneCCDC43
Homology/Alignments : Family Browser (UCSC)CCDC43
Gene fusions - Rearrangements
Fusion : MitelmanCCDC43/YBX2 [17q21.31/17p13.1]  
Fusion: Tumor Portal CCDC43
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC43 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC43
dbVarCCDC43
ClinVarCCDC43
1000_GenomesCCDC43 
Exome Variant ServerCCDC43
ExAC (Exome Aggregation Consortium)ENSG00000180329
GNOMAD BrowserENSG00000180329
Genetic variants : HAPMAP124808
Genomic Variants (DGV)CCDC43 [DGVbeta]
DECIPHERCCDC43 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC43 
Mutations
ICGC Data PortalCCDC43 
TCGA Data PortalCCDC43 
Broad Tumor PortalCCDC43
OASIS PortalCCDC43 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC43  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC43
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC43
DgiDB (Drug Gene Interaction Database)CCDC43
DoCM (Curated mutations)CCDC43 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC43 (select a term)
intoGenCCDC43
Cancer3DCCDC43(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC43
Genetic Testing Registry CCDC43
NextProtQ96MW1 [Medical]
TSGene124808
GENETestsCCDC43
Target ValidationCCDC43
Huge Navigator CCDC43 [HugePedia]
snp3D : Map Gene to Disease124808
BioCentury BCIQCCDC43
ClinGenCCDC43
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD124808
Chemical/Pharm GKB GenePA142672160
Clinical trialCCDC43
Miscellaneous
canSAR (ICR)CCDC43 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC43
EVEXCCDC43
GoPubMedCCDC43
iHOPCCDC43
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:43:22 CET 2017

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