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CCDC51 (coiled-coil domain containing 51)

Identity

Alias_symbol (synonym)FLJ12436
Other alias-
HGNC (Hugo) CCDC51
LocusID (NCBI) 79714
Atlas_Id 61548
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 48473580 and ends at 48481529 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC51   25714
Cards
Entrez_Gene (NCBI)CCDC51  79714  coiled-coil domain containing 51
Aliases
GeneCards (Weizmann)CCDC51
Ensembl hg19 (Hinxton)ENSG00000164051 [Gene_View]  chr3:48473580-48481529 [Contig_View]  CCDC51 [Vega]
Ensembl hg38 (Hinxton)ENSG00000164051 [Gene_View]  chr3:48473580-48481529 [Contig_View]  CCDC51 [Vega]
ICGC DataPortalENSG00000164051
TCGA cBioPortalCCDC51
AceView (NCBI)CCDC51
Genatlas (Paris)CCDC51
WikiGenes79714
SOURCE (Princeton)CCDC51
Genetics Home Reference (NIH)CCDC51
Genomic and cartography
GoldenPath hg19 (UCSC)CCDC51  -     chr3:48473580-48481529 -  3p21.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCDC51  -     3p21.31   [Description]    (hg38-Dec_2013)
EnsemblCCDC51 - 3p21.31 [CytoView hg19]  CCDC51 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBICCDC51 [Mapview hg19]  CCDC51 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA749172 AK022498 AL533758 AW957929 BC004341
RefSeq transcript (Entrez)NM_001256964 NM_001256965 NM_001256966 NM_001256967 NM_001256968 NM_001256969 NM_024661
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)CCDC51
Cluster EST : UnigeneHs.740720 [ NCBI ]
CGAP (NCI)Hs.740720
Alternative Splicing GalleryENSG00000164051
Gene ExpressionCCDC51 [ NCBI-GEO ]   CCDC51 [ EBI - ARRAY_EXPRESS ]   CCDC51 [ SEEK ]   CCDC51 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC51 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79714
GTEX Portal (Tissue expression)CCDC51
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96ER9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96ER9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96ER9
Splice isoforms : SwissVarQ96ER9
PhosPhoSitePlusQ96ER9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC51
DMDM Disease mutations79714
Blocks (Seattle)CCDC51
SuperfamilyQ96ER9
Human Protein AtlasENSG00000164051
Peptide AtlasQ96ER9
HPRD08571
IPIIPI00153023   IPI00795428   IPI00924763   IPI00927503   
Protein Interaction databases
DIP (DOE-UCLA)Q96ER9
IntAct (EBI)Q96ER9
FunCoupENSG00000164051
BioGRIDCCDC51
STRING (EMBL)CCDC51
ZODIACCCDC51
Ontologies - Pathways
QuickGOQ96ER9
Ontology : AmiGOnucleoplasm  mitochondrion  integral component of membrane  
Ontology : EGO-EBInucleoplasm  mitochondrion  integral component of membrane  
NDEx NetworkCCDC51
Atlas of Cancer Signalling NetworkCCDC51
Wikipedia pathwaysCCDC51
Orthology - Evolution
OrthoDB79714
GeneTree (enSembl)ENSG00000164051
Phylogenetic Trees/Animal Genes : TreeFamCCDC51
HOVERGENQ96ER9
HOGENOMQ96ER9
Homologs : HomoloGeneCCDC51
Homology/Alignments : Family Browser (UCSC)CCDC51
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC51 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC51
dbVarCCDC51
ClinVarCCDC51
1000_GenomesCCDC51 
Exome Variant ServerCCDC51
ExAC (Exome Aggregation Consortium)CCDC51 (select the gene name)
Genetic variants : HAPMAP79714
Genomic Variants (DGV)CCDC51 [DGVbeta]
DECIPHER (Syndromes)3:48473580-48481529  ENSG00000164051
CONAN: Copy Number AnalysisCCDC51 
Mutations
ICGC Data PortalCCDC51 
TCGA Data PortalCCDC51 
Broad Tumor PortalCCDC51
OASIS PortalCCDC51 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC51  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC51
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch CCDC51
DgiDB (Drug Gene Interaction Database)CCDC51
DoCM (Curated mutations)CCDC51 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC51 (select a term)
intoGenCCDC51
Cancer3DCCDC51(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC51
Genetic Testing Registry CCDC51
NextProtQ96ER9 [Medical]
TSGene79714
GENETestsCCDC51
Huge Navigator CCDC51 [HugePedia]
snp3D : Map Gene to Disease79714
BioCentury BCIQCCDC51
ClinGenCCDC51
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79714
Chemical/Pharm GKB GenePA142672167
Clinical trialCCDC51
Miscellaneous
canSAR (ICR)CCDC51 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC51
EVEXCCDC51
GoPubMedCCDC51
iHOPCCDC51
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:58:36 CET 2017

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