Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CCDC54 (coiled-coil domain containing 54)

Identity

Alias_symbol (synonym)NYD-SP17
FLJ25362
SP17
Other alias
HGNC (Hugo) CCDC54
LocusID (NCBI) 84692
Atlas_Id 46171
Location 3q13.12  [Link to chromosome band 3q13]
Location_base_pair Starts at 107096188 and ends at 107097481 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC54   30703
Cards
Entrez_Gene (NCBI)CCDC54  84692  coiled-coil domain containing 54
AliasesNYD-SP17; SP17
GeneCards (Weizmann)CCDC54
Ensembl hg19 (Hinxton)ENSG00000138483 [Gene_View]  chr3:107096188-107097481 [Contig_View]  CCDC54 [Vega]
Ensembl hg38 (Hinxton)ENSG00000138483 [Gene_View]  chr3:107096188-107097481 [Contig_View]  CCDC54 [Vega]
ICGC DataPortalENSG00000138483
TCGA cBioPortalCCDC54
AceView (NCBI)CCDC54
Genatlas (Paris)CCDC54
WikiGenes84692
SOURCE (Princeton)CCDC54
Genetics Home Reference (NIH)CCDC54
Genomic and cartography
GoldenPath hg19 (UCSC)CCDC54  -     chr3:107096188-107097481 +  3q13.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCDC54  -     3q13.12   [Description]    (hg38-Dec_2013)
EnsemblCCDC54 - 3q13.12 [CytoView hg19]  CCDC54 - 3q13.12 [CytoView hg38]
Mapping of homologs : NCBICCDC54 [Mapview hg19]  CCDC54 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF367469 AK058091 BC030780 DQ890829 DQ890830
RefSeq transcript (Entrez)NM_032600
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)CCDC54
Cluster EST : UnigeneHs.164799 [ NCBI ]
CGAP (NCI)Hs.164799
Alternative Splicing GalleryENSG00000138483
Gene ExpressionCCDC54 [ NCBI-GEO ]   CCDC54 [ EBI - ARRAY_EXPRESS ]   CCDC54 [ SEEK ]   CCDC54 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC54 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84692
GTEX Portal (Tissue expression)CCDC54
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEL0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEL0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEL0
Splice isoforms : SwissVarQ8NEL0
PhosPhoSitePlusQ8NEL0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC54
DMDM Disease mutations84692
Blocks (Seattle)CCDC54
SuperfamilyQ8NEL0
Human Protein AtlasENSG00000138483
Peptide AtlasQ8NEL0
HPRD14860
IPIIPI00302467   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEL0
IntAct (EBI)Q8NEL0
FunCoupENSG00000138483
BioGRIDCCDC54
STRING (EMBL)CCDC54
ZODIACCCDC54
Ontologies - Pathways
QuickGOQ8NEL0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC54
Atlas of Cancer Signalling NetworkCCDC54
Wikipedia pathwaysCCDC54
Orthology - Evolution
OrthoDB84692
GeneTree (enSembl)ENSG00000138483
Phylogenetic Trees/Animal Genes : TreeFamCCDC54
HOVERGENQ8NEL0
HOGENOMQ8NEL0
Homologs : HomoloGeneCCDC54
Homology/Alignments : Family Browser (UCSC)CCDC54
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC54 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC54
dbVarCCDC54
ClinVarCCDC54
1000_GenomesCCDC54 
Exome Variant ServerCCDC54
ExAC (Exome Aggregation Consortium)CCDC54 (select the gene name)
Genetic variants : HAPMAP84692
Genomic Variants (DGV)CCDC54 [DGVbeta]
DECIPHER (Syndromes)3:107096188-107097481  ENSG00000138483
CONAN: Copy Number AnalysisCCDC54 
Mutations
ICGC Data PortalCCDC54 
TCGA Data PortalCCDC54 
Broad Tumor PortalCCDC54
OASIS PortalCCDC54 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC54  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC54
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC54
DgiDB (Drug Gene Interaction Database)CCDC54
DoCM (Curated mutations)CCDC54 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC54 (select a term)
intoGenCCDC54
Cancer3DCCDC54(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC54
Genetic Testing Registry CCDC54
NextProtQ8NEL0 [Medical]
TSGene84692
GENETestsCCDC54
Huge Navigator CCDC54 [HugePedia]
snp3D : Map Gene to Disease84692
BioCentury BCIQCCDC54
ClinGenCCDC54
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84692
Chemical/Pharm GKB GenePA142672170
Clinical trialCCDC54
Miscellaneous
canSAR (ICR)CCDC54 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC54
EVEXCCDC54
GoPubMedCCDC54
iHOPCCDC54
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:58:59 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.