Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CCDC57 (coiled-coil domain containing 57)

Identity

Alias_symbol (synonym)FLJ00130
FLJ23754
Other alias-
HGNC (Hugo) CCDC57
LocusID (NCBI) 284001
Atlas_Id 61550
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 82153608 and ends at 82212829 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FASN (17q25.3) / CCDC57 (17q25.3)PRDX3 (10q26.11) / CCDC57 (17q25.3)SIRT7 (17q25.3) / CCDC57 (17q25.3)
SIRT7 CCDC57FASN CCDC57

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC57   27564
Cards
Entrez_Gene (NCBI)CCDC57  284001  coiled-coil domain containing 57
Aliases
GeneCards (Weizmann)CCDC57
Ensembl hg19 (Hinxton)ENSG00000176155 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176155 [Gene_View]  chr17:82153608-82212829 [Contig_View]  CCDC57 [Vega]
ICGC DataPortalENSG00000176155
TCGA cBioPortalCCDC57
AceView (NCBI)CCDC57
Genatlas (Paris)CCDC57
WikiGenes284001
SOURCE (Princeton)CCDC57
Genetics Home Reference (NIH)CCDC57
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC57  -     chr17:82153608-82212829 -  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC57  -     17q25.3   [Description]    (hg19-Feb_2009)
EnsemblCCDC57 - 17q25.3 [CytoView hg19]  CCDC57 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBICCDC57 [Mapview hg19]  CCDC57 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF007146 AK074059 AK074334 AK125941 AL137530
RefSeq transcript (Entrez)NM_001316321 NM_152675 NM_198082
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC57
Cluster EST : UnigeneHs.631724 [ NCBI ]
CGAP (NCI)Hs.631724
Alternative Splicing GalleryENSG00000176155
Gene ExpressionCCDC57 [ NCBI-GEO ]   CCDC57 [ EBI - ARRAY_EXPRESS ]   CCDC57 [ SEEK ]   CCDC57 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC57 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284001
GTEX Portal (Tissue expression)CCDC57
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2TAC2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2TAC2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2TAC2
Splice isoforms : SwissVarQ2TAC2
PhosPhoSitePlusQ2TAC2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC57
DMDM Disease mutations284001
Blocks (Seattle)CCDC57
SuperfamilyQ2TAC2
Human Protein AtlasENSG00000176155
Peptide AtlasQ2TAC2
HPRD08041
IPIIPI00238725   IPI00847219   IPI00385648   IPI00853245   IPI00152679   IPI00795454   IPI00791306   
Protein Interaction databases
DIP (DOE-UCLA)Q2TAC2
IntAct (EBI)Q2TAC2
FunCoupENSG00000176155
BioGRIDCCDC57
STRING (EMBL)CCDC57
ZODIACCCDC57
Ontologies - Pathways
QuickGOQ2TAC2
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkCCDC57
Atlas of Cancer Signalling NetworkCCDC57
Wikipedia pathwaysCCDC57
Orthology - Evolution
OrthoDB284001
GeneTree (enSembl)ENSG00000176155
Phylogenetic Trees/Animal Genes : TreeFamCCDC57
HOVERGENQ2TAC2
HOGENOMQ2TAC2
Homologs : HomoloGeneCCDC57
Homology/Alignments : Family Browser (UCSC)CCDC57
Gene fusions - Rearrangements
Fusion: TCGASIRT7 CCDC57
Fusion: TCGAFASN CCDC57
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC57 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC57
dbVarCCDC57
ClinVarCCDC57
1000_GenomesCCDC57 
Exome Variant ServerCCDC57
ExAC (Exome Aggregation Consortium)CCDC57 (select the gene name)
Genetic variants : HAPMAP284001
Genomic Variants (DGV)CCDC57 [DGVbeta]
DECIPHERCCDC57 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC57 
Mutations
ICGC Data PortalCCDC57 
TCGA Data PortalCCDC57 
Broad Tumor PortalCCDC57
OASIS PortalCCDC57 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC57  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC57
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC57
DgiDB (Drug Gene Interaction Database)CCDC57
DoCM (Curated mutations)CCDC57 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC57 (select a term)
intoGenCCDC57
Cancer3DCCDC57(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC57
Genetic Testing Registry CCDC57
NextProtQ2TAC2 [Medical]
TSGene284001
GENETestsCCDC57
Target ValidationCCDC57
Huge Navigator CCDC57 [HugePedia]
snp3D : Map Gene to Disease284001
BioCentury BCIQCCDC57
ClinGenCCDC57
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284001
Chemical/Pharm GKB GenePA142672173
Clinical trialCCDC57
Miscellaneous
canSAR (ICR)CCDC57 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC57
EVEXCCDC57
GoPubMedCCDC57
iHOPCCDC57
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:04:13 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.