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CCDC58 (coiled-coil domain containing 58)

Identity

Alias_symbol (synonym)FLJ33273
Other alias-
HGNC (Hugo) CCDC58
LocusID (NCBI) 131076
Atlas_Id 61551
Location 3q21.1  [Link to chromosome band 3q21]
Location_base_pair Starts at 122078438 and ends at 122102078 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CCDC58 (3q21.1) / CLIP1 (12q24.31)CCDC58 (3q21.1) / ENO1 (1p36.23)CHD7 (8q12.2) / CCDC58 (3q21.1)
GOLGB1 (3q13.33) / CCDC58 (3q21.1)CHD7 CCDC58GOLGB1 CCDC58

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC58   31136
Cards
Entrez_Gene (NCBI)CCDC58  131076  coiled-coil domain containing 58
Aliases
GeneCards (Weizmann)CCDC58
Ensembl hg19 (Hinxton)ENSG00000160124 [Gene_View]  chr3:122078438-122102078 [Contig_View]  CCDC58 [Vega]
Ensembl hg38 (Hinxton)ENSG00000160124 [Gene_View]  chr3:122078438-122102078 [Contig_View]  CCDC58 [Vega]
ICGC DataPortalENSG00000160124
TCGA cBioPortalCCDC58
AceView (NCBI)CCDC58
Genatlas (Paris)CCDC58
WikiGenes131076
SOURCE (Princeton)CCDC58
Genetics Home Reference (NIH)CCDC58
Genomic and cartography
GoldenPath hg19 (UCSC)CCDC58  -     chr3:122078438-122102078 -  3q21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCDC58  -     3q21.1   [Description]    (hg38-Dec_2013)
EnsemblCCDC58 - 3q21.1 [CytoView hg19]  CCDC58 - 3q21.1 [CytoView hg38]
Mapping of homologs : NCBICCDC58 [Mapview hg19]  CCDC58 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC054051 BC062725 BC109378 CD683826 DA025111
RefSeq transcript (Entrez)NM_001017928 NM_001308326
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)CCDC58
Cluster EST : UnigeneHs.220594 [ NCBI ]
CGAP (NCI)Hs.220594
Alternative Splicing GalleryENSG00000160124
Gene ExpressionCCDC58 [ NCBI-GEO ]   CCDC58 [ EBI - ARRAY_EXPRESS ]   CCDC58 [ SEEK ]   CCDC58 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC58 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)131076
GTEX Portal (Tissue expression)CCDC58
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4VC31   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4VC31  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4VC31
Splice isoforms : SwissVarQ4VC31
PhosPhoSitePlusQ4VC31
Domains : Interpro (EBI)Caffeine_induced_death_Cid2   
Domain families : Pfam (Sanger)Cid2 (PF09774)   
Domain families : Pfam (NCBI)pfam09774   
Conserved Domain (NCBI)CCDC58
DMDM Disease mutations131076
Blocks (Seattle)CCDC58
SuperfamilyQ4VC31
Human Protein AtlasENSG00000160124
Peptide AtlasQ4VC31
HPRD18548
IPIIPI00046828   IPI00946377   IPI00945719   IPI00945888   
Protein Interaction databases
DIP (DOE-UCLA)Q4VC31
IntAct (EBI)Q4VC31
FunCoupENSG00000160124
BioGRIDCCDC58
STRING (EMBL)CCDC58
ZODIACCCDC58
Ontologies - Pathways
QuickGOQ4VC31
Ontology : AmiGOmitochondrion  
Ontology : EGO-EBImitochondrion  
NDEx NetworkCCDC58
Atlas of Cancer Signalling NetworkCCDC58
Wikipedia pathwaysCCDC58
Orthology - Evolution
OrthoDB131076
GeneTree (enSembl)ENSG00000160124
Phylogenetic Trees/Animal Genes : TreeFamCCDC58
HOVERGENQ4VC31
HOGENOMQ4VC31
Homologs : HomoloGeneCCDC58
Homology/Alignments : Family Browser (UCSC)CCDC58
Gene fusions - Rearrangements
Fusion: TCGACHD7 CCDC58
Fusion: TCGAGOLGB1 CCDC58
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC58 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC58
dbVarCCDC58
ClinVarCCDC58
1000_GenomesCCDC58 
Exome Variant ServerCCDC58
ExAC (Exome Aggregation Consortium)CCDC58 (select the gene name)
Genetic variants : HAPMAP131076
Genomic Variants (DGV)CCDC58 [DGVbeta]
DECIPHER (Syndromes)3:122078438-122102078  ENSG00000160124
CONAN: Copy Number AnalysisCCDC58 
Mutations
ICGC Data PortalCCDC58 
TCGA Data PortalCCDC58 
Broad Tumor PortalCCDC58
OASIS PortalCCDC58 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC58  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC58
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch CCDC58
DgiDB (Drug Gene Interaction Database)CCDC58
DoCM (Curated mutations)CCDC58 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC58 (select a term)
intoGenCCDC58
Cancer3DCCDC58(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC58
Genetic Testing Registry CCDC58
NextProtQ4VC31 [Medical]
TSGene131076
GENETestsCCDC58
Huge Navigator CCDC58 [HugePedia]
snp3D : Map Gene to Disease131076
BioCentury BCIQCCDC58
ClinGenCCDC58
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD131076
Chemical/Pharm GKB GenePA143485410
Clinical trialCCDC58
Miscellaneous
canSAR (ICR)CCDC58 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC58
EVEXCCDC58
GoPubMedCCDC58
iHOPCCDC58
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:58:37 CET 2017

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