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CCDC59 (coiled-coil domain containing 59)

Identity

Alias (NCBI)BR22
HSPC128
TAP26
HGNC (Hugo) CCDC59
HGNC Alias symbHSPC128
TAP26
BR22
LocusID (NCBI) 29080
Atlas_Id 61552
Location 12q21.31  [Link to chromosome band 12q21]
Location_base_pair Starts at 82352304 and ends at 82358387 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATXN2 (12q24.12) / CCDC59 (12q21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CCDC59   25005
Cards
Entrez_Gene (NCBI)CCDC59    coiled-coil domain containing 59
AliasesBR22; HSPC128; TAP26
GeneCards (Weizmann)CCDC59
Ensembl hg19 (Hinxton)ENSG00000133773 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000133773 [Gene_View]  ENSG00000133773 [Sequence]  chr12:82352304-82358387 [Contig_View]  CCDC59 [Vega]
ICGC DataPortalENSG00000133773
TCGA cBioPortalCCDC59
AceView (NCBI)CCDC59
Genatlas (Paris)CCDC59
SOURCE (Princeton)CCDC59
Genetics Home Reference (NIH)CCDC59
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC59  -     chr12:82352304-82358387 -  12q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC59  -     12q21.31   [Description]    (hg19-Feb_2009)
GoldenPathCCDC59 - 12q21.31 [CytoView hg19]  CCDC59 - 12q21.31 [CytoView hg38]
ImmunoBaseENSG00000133773
Genome Data Viewer NCBICCDC59 [Mapview hg19]  
OMIM619280   
Gene and transcription
Genbank (Entrez)AF161477 AF213377 AK001156 AK225139 AL832749
RefSeq transcript (Entrez)NM_014167
Consensus coding sequences : CCDS (NCBI)CCDC59
Gene ExpressionCCDC59 [ NCBI-GEO ]   CCDC59 [ EBI - ARRAY_EXPRESS ]   CCDC59 [ SEEK ]   CCDC59 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC59 [ Firebrowse - Broad ]
GenevisibleExpression of CCDC59 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29080
GTEX Portal (Tissue expression)CCDC59
Human Protein AtlasENSG00000133773-CCDC59 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P031   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P031  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P031
PhosPhoSitePlusQ9P031
Domains : Interpro (EBI)Fyv7/TAP26   
Domain families : Pfam (Sanger)rRNA_processing (PF08524)   
Domain families : Pfam (NCBI)pfam08524   
Conserved Domain (NCBI)CCDC59
SuperfamilyQ9P031
AlphaFold pdb e-kbQ9P031   
Human Protein Atlas [tissue]ENSG00000133773-CCDC59 [tissue]
HPRD13696
Protein Interaction databases
DIP (DOE-UCLA)Q9P031
IntAct (EBI)Q9P031
BioGRIDCCDC59
STRING (EMBL)CCDC59
ZODIACCCDC59
Ontologies - Pathways
QuickGOQ9P031
Ontology : AmiGORNA binding  protein binding  nucleoplasm  cellular protein metabolic process  
Ontology : EGO-EBIRNA binding  protein binding  nucleoplasm  cellular protein metabolic process  
NDEx NetworkCCDC59
Atlas of Cancer Signalling NetworkCCDC59
Wikipedia pathwaysCCDC59
Orthology - Evolution
OrthoDB29080
GeneTree (enSembl)ENSG00000133773
Phylogenetic Trees/Animal Genes : TreeFamCCDC59
Homologs : HomoloGeneCCDC59
Homology/Alignments : Family Browser (UCSC)CCDC59
Gene fusions - Rearrangements
Fusion : QuiverCCDC59
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC59 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC59
dbVarCCDC59
ClinVarCCDC59
MonarchCCDC59
1000_GenomesCCDC59 
Exome Variant ServerCCDC59
GNOMAD BrowserENSG00000133773
Varsome BrowserCCDC59
ACMGCCDC59 variants
VarityQ9P031
Genomic Variants (DGV)CCDC59 [DGVbeta]
DECIPHERCCDC59 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC59 
Mutations
ICGC Data PortalCCDC59 
TCGA Data PortalCCDC59 
Broad Tumor PortalCCDC59
OASIS PortalCCDC59 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC59  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCCDC59
Mutations and Diseases : HGMDCCDC59
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCCDC59
DgiDB (Drug Gene Interaction Database)CCDC59
DoCM (Curated mutations)CCDC59
CIViC (Clinical Interpretations of Variants in Cancer)CCDC59
Cancer3DCCDC59
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM619280   
Orphanet
DisGeNETCCDC59
MedgenCCDC59
Genetic Testing Registry CCDC59
NextProtQ9P031 [Medical]
GENETestsCCDC59
Target ValidationCCDC59
Huge Navigator CCDC59 [HugePedia]
ClinGenCCDC59
Clinical trials, drugs, therapy
MyCancerGenomeCCDC59
Protein Interactions : CTDCCDC59
Pharm GKB GenePA143485412
PharosQ9P031
Clinical trialCCDC59
Miscellaneous
canSAR (ICR)CCDC59
HarmonizomeCCDC59
DataMed IndexCCDC59
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCCDC59
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:45:18 CEST 2021

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