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CCDC59 (coiled-coil domain containing 59)

Identity

Alias_symbol (synonym)HSPC128
TAP26
BR22
Other alias
HGNC (Hugo) CCDC59
LocusID (NCBI) 29080
Atlas_Id 61552
Location 12q21.31  [Link to chromosome band 12q21]
Location_base_pair Starts at 82352304 and ends at 82358420 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATXN2 (12q24.12) / CCDC59 (12q21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC59   25005
Cards
Entrez_Gene (NCBI)CCDC59  29080  coiled-coil domain containing 59
AliasesBR22; HSPC128; TAP26
GeneCards (Weizmann)CCDC59
Ensembl hg19 (Hinxton)ENSG00000133773 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000133773 [Gene_View]  chr12:82352304-82358420 [Contig_View]  CCDC59 [Vega]
ICGC DataPortalENSG00000133773
TCGA cBioPortalCCDC59
AceView (NCBI)CCDC59
Genatlas (Paris)CCDC59
WikiGenes29080
SOURCE (Princeton)CCDC59
Genetics Home Reference (NIH)CCDC59
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC59  -     chr12:82352304-82358420 -  12q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC59  -     12q21.31   [Description]    (hg19-Feb_2009)
EnsemblCCDC59 - 12q21.31 [CytoView hg19]  CCDC59 - 12q21.31 [CytoView hg38]
Mapping of homologs : NCBICCDC59 [Mapview hg19]  CCDC59 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF161477 AF213377 AK001156 AK225139 AL832749
RefSeq transcript (Entrez)NM_014167
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC59
Cluster EST : UnigeneHs.582627 [ NCBI ]
CGAP (NCI)Hs.582627
Alternative Splicing GalleryENSG00000133773
Gene ExpressionCCDC59 [ NCBI-GEO ]   CCDC59 [ EBI - ARRAY_EXPRESS ]   CCDC59 [ SEEK ]   CCDC59 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC59 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29080
GTEX Portal (Tissue expression)CCDC59
Human Protein AtlasENSG00000133773-CCDC59 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P031   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P031  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P031
Splice isoforms : SwissVarQ9P031
PhosPhoSitePlusQ9P031
Domains : Interpro (EBI)Fyv7/TAP26   
Domain families : Pfam (Sanger)rRNA_processing (PF08524)   
Domain families : Pfam (NCBI)pfam08524   
Conserved Domain (NCBI)CCDC59
DMDM Disease mutations29080
Blocks (Seattle)CCDC59
SuperfamilyQ9P031
Human Protein Atlas [tissue]ENSG00000133773-CCDC59 [tissue]
Peptide AtlasQ9P031
HPRD13696
IPIIPI00329594   IPI01021545   
Protein Interaction databases
DIP (DOE-UCLA)Q9P031
IntAct (EBI)Q9P031
FunCoupENSG00000133773
BioGRIDCCDC59
STRING (EMBL)CCDC59
ZODIACCCDC59
Ontologies - Pathways
QuickGOQ9P031
Ontology : AmiGORNA binding  protein binding  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  cellular protein metabolic process  
Ontology : EGO-EBIRNA binding  protein binding  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  cellular protein metabolic process  
NDEx NetworkCCDC59
Atlas of Cancer Signalling NetworkCCDC59
Wikipedia pathwaysCCDC59
Orthology - Evolution
OrthoDB29080
GeneTree (enSembl)ENSG00000133773
Phylogenetic Trees/Animal Genes : TreeFamCCDC59
HOVERGENQ9P031
HOGENOMQ9P031
Homologs : HomoloGeneCCDC59
Homology/Alignments : Family Browser (UCSC)CCDC59
Gene fusions - Rearrangements
Tumor Fusion PortalCCDC59
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC59 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC59
dbVarCCDC59
ClinVarCCDC59
1000_GenomesCCDC59 
Exome Variant ServerCCDC59
ExAC (Exome Aggregation Consortium)ENSG00000133773
GNOMAD BrowserENSG00000133773
Genetic variants : HAPMAP29080
Genomic Variants (DGV)CCDC59 [DGVbeta]
DECIPHERCCDC59 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC59 
Mutations
ICGC Data PortalCCDC59 
TCGA Data PortalCCDC59 
Broad Tumor PortalCCDC59
OASIS PortalCCDC59 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC59  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC59
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch CCDC59
DgiDB (Drug Gene Interaction Database)CCDC59
DoCM (Curated mutations)CCDC59 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC59 (select a term)
intoGenCCDC59
Cancer3DCCDC59(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCDC59
MedgenCCDC59
Genetic Testing Registry CCDC59
NextProtQ9P031 [Medical]
TSGene29080
GENETestsCCDC59
Target ValidationCCDC59
Huge Navigator CCDC59 [HugePedia]
snp3D : Map Gene to Disease29080
BioCentury BCIQCCDC59
ClinGenCCDC59
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29080
Chemical/Pharm GKB GenePA143485412
Clinical trialCCDC59
Miscellaneous
canSAR (ICR)CCDC59 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC59
EVEXCCDC59
GoPubMedCCDC59
iHOPCCDC59
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:25:56 CET 2017

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