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CCDC60 (coiled-coil domain containing 60)

Identity

Alias_symbol (synonym)MGC39827
Other alias-
HGNC (Hugo) CCDC60
LocusID (NCBI) 160777
Atlas_Id 61553
Location 12q24.23  [Link to chromosome band 12q24]
Location_base_pair Starts at 119334712 and ends at 119541047 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCDC60 (12q24.23) / BMPR2 (2q33.1)KDM2B (12q24.31) / CCDC60 (12q24.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC60   28610
Cards
Entrez_Gene (NCBI)CCDC60  160777  coiled-coil domain containing 60
Aliases
GeneCards (Weizmann)CCDC60
Ensembl hg19 (Hinxton)ENSG00000183273 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183273 [Gene_View]  chr12:119334712-119541047 [Contig_View]  CCDC60 [Vega]
ICGC DataPortalENSG00000183273
TCGA cBioPortalCCDC60
AceView (NCBI)CCDC60
Genatlas (Paris)CCDC60
WikiGenes160777
SOURCE (Princeton)CCDC60
Genetics Home Reference (NIH)CCDC60
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC60  -     chr12:119334712-119541047 +  12q24.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC60  -     12q24.23   [Description]    (hg19-Feb_2009)
EnsemblCCDC60 - 12q24.23 [CytoView hg19]  CCDC60 - 12q24.23 [CytoView hg38]
Mapping of homologs : NCBICCDC60 [Mapview hg19]  CCDC60 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK310830 BC040553 BM724243 DB204596 DB535883
RefSeq transcript (Entrez)NM_178499
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC60
Cluster EST : UnigeneHs.98188 [ NCBI ]
CGAP (NCI)Hs.98188
Alternative Splicing GalleryENSG00000183273
Gene ExpressionCCDC60 [ NCBI-GEO ]   CCDC60 [ EBI - ARRAY_EXPRESS ]   CCDC60 [ SEEK ]   CCDC60 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC60 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)160777
GTEX Portal (Tissue expression)CCDC60
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IWA6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IWA6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IWA6
Splice isoforms : SwissVarQ8IWA6
PhosPhoSitePlusQ8IWA6
Domains : Interpro (EBI)DUF4698   
Domain families : Pfam (Sanger)DUF4698 (PF15769)   
Domain families : Pfam (NCBI)pfam15769   
Conserved Domain (NCBI)CCDC60
DMDM Disease mutations160777
Blocks (Seattle)CCDC60
SuperfamilyQ8IWA6
Human Protein AtlasENSG00000183273
Peptide AtlasQ8IWA6
HPRD11347
IPIIPI00217244   IPI01009412   IPI01009700   
Protein Interaction databases
DIP (DOE-UCLA)Q8IWA6
IntAct (EBI)Q8IWA6
FunCoupENSG00000183273
BioGRIDCCDC60
STRING (EMBL)CCDC60
ZODIACCCDC60
Ontologies - Pathways
QuickGOQ8IWA6
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkCCDC60
Atlas of Cancer Signalling NetworkCCDC60
Wikipedia pathwaysCCDC60
Orthology - Evolution
OrthoDB160777
GeneTree (enSembl)ENSG00000183273
Phylogenetic Trees/Animal Genes : TreeFamCCDC60
HOVERGENQ8IWA6
HOGENOMQ8IWA6
Homologs : HomoloGeneCCDC60
Homology/Alignments : Family Browser (UCSC)CCDC60
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC60 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC60
dbVarCCDC60
ClinVarCCDC60
1000_GenomesCCDC60 
Exome Variant ServerCCDC60
ExAC (Exome Aggregation Consortium)CCDC60 (select the gene name)
Genetic variants : HAPMAP160777
Genomic Variants (DGV)CCDC60 [DGVbeta]
DECIPHERCCDC60 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC60 
Mutations
ICGC Data PortalCCDC60 
TCGA Data PortalCCDC60 
Broad Tumor PortalCCDC60
OASIS PortalCCDC60 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC60  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC60
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC60
DgiDB (Drug Gene Interaction Database)CCDC60
DoCM (Curated mutations)CCDC60 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC60 (select a term)
intoGenCCDC60
Cancer3DCCDC60(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC60
Genetic Testing Registry CCDC60
NextProtQ8IWA6 [Medical]
TSGene160777
GENETestsCCDC60
Target ValidationCCDC60
Huge Navigator CCDC60 [HugePedia]
snp3D : Map Gene to Disease160777
BioCentury BCIQCCDC60
ClinGenCCDC60
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD160777
Chemical/Pharm GKB GenePA143485413
Clinical trialCCDC60
Miscellaneous
canSAR (ICR)CCDC60 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC60
EVEXCCDC60
GoPubMedCCDC60
iHOPCCDC60
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:13 CEST 2017

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