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CCDC61 (coiled-coil domain containing 61)

Identity

Other alias-
HGNC (Hugo) CCDC61
LocusID (NCBI) 729440
Atlas_Id 61554
Location 19q13.32  [Link to chromosome band 19q13]
Location_base_pair Starts at 46498719 and ends at 46521874 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AMBRA1 (11p11.2) / CCDC61 (19q13.32)CCDC61 (19q13.32) / CHST1 (11p11.2)CCDC61 (19q13.32) / FUT2 (19q13.33)
OPA3 (19q13.32) / CCDC61 (19q13.32)ZNF544 (19q13.43) / CCDC61 (19q13.32)CCDC61 FUT2
CCDC61 CHST1ZNF544 CCDC61AMBRA1 CCDC61

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC61   33629
Cards
Entrez_Gene (NCBI)CCDC61  729440  coiled-coil domain containing 61
Aliases
GeneCards (Weizmann)CCDC61
Ensembl hg19 (Hinxton)ENSG00000104983 [Gene_View]  chr19:46498719-46521874 [Contig_View]  CCDC61 [Vega]
Ensembl hg38 (Hinxton)ENSG00000104983 [Gene_View]  chr19:46498719-46521874 [Contig_View]  CCDC61 [Vega]
ICGC DataPortalENSG00000104983
TCGA cBioPortalCCDC61
AceView (NCBI)CCDC61
Genatlas (Paris)CCDC61
WikiGenes729440
SOURCE (Princeton)CCDC61
Genetics Home Reference (NIH)CCDC61
Genomic and cartography
GoldenPath hg19 (UCSC)CCDC61  -     chr19:46498719-46521874 +  19q13.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCDC61  -     19q13.32   [Description]    (hg38-Dec_2013)
EnsemblCCDC61 - 19q13.32 [CytoView hg19]  CCDC61 - 19q13.32 [CytoView hg38]
Mapping of homologs : NCBICCDC61 [Mapview hg19]  CCDC61 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW453013 BI819372 BQ184369 CA775840 CB852675
RefSeq transcript (Entrez)NM_001080402 NM_001267723
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)CCDC61
Cluster EST : UnigeneHs.515479 [ NCBI ]
CGAP (NCI)Hs.515479
Alternative Splicing GalleryENSG00000104983
Gene ExpressionCCDC61 [ NCBI-GEO ]   CCDC61 [ EBI - ARRAY_EXPRESS ]   CCDC61 [ SEEK ]   CCDC61 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC61 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729440
GTEX Portal (Tissue expression)CCDC61
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6R9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6R9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6R9
Splice isoforms : SwissVarQ9Y6R9
PhosPhoSitePlusQ9Y6R9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC61
DMDM Disease mutations729440
Blocks (Seattle)CCDC61
SuperfamilyQ9Y6R9
Human Protein AtlasENSG00000104983
Peptide AtlasQ9Y6R9
IPIIPI00947352   IPI00295425   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6R9
IntAct (EBI)Q9Y6R9
FunCoupENSG00000104983
BioGRIDCCDC61
STRING (EMBL)CCDC61
ZODIACCCDC61
Ontologies - Pathways
QuickGOQ9Y6R9
Ontology : AmiGOcentrosome  
Ontology : EGO-EBIcentrosome  
NDEx NetworkCCDC61
Atlas of Cancer Signalling NetworkCCDC61
Wikipedia pathwaysCCDC61
Orthology - Evolution
OrthoDB729440
GeneTree (enSembl)ENSG00000104983
Phylogenetic Trees/Animal Genes : TreeFamCCDC61
HOVERGENQ9Y6R9
HOGENOMQ9Y6R9
Homologs : HomoloGeneCCDC61
Homology/Alignments : Family Browser (UCSC)CCDC61
Gene fusions - Rearrangements
Fusion: TCGACCDC61 FUT2
Fusion: TCGACCDC61 CHST1
Fusion: TCGAZNF544 CCDC61
Fusion: TCGAAMBRA1 CCDC61
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC61 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC61
dbVarCCDC61
ClinVarCCDC61
1000_GenomesCCDC61 
Exome Variant ServerCCDC61
ExAC (Exome Aggregation Consortium)CCDC61 (select the gene name)
Genetic variants : HAPMAP729440
Genomic Variants (DGV)CCDC61 [DGVbeta]
DECIPHER (Syndromes)19:46498719-46521874  ENSG00000104983
CONAN: Copy Number AnalysisCCDC61 
Mutations
ICGC Data PortalCCDC61 
TCGA Data PortalCCDC61 
Broad Tumor PortalCCDC61
OASIS PortalCCDC61 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC61  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC61
BioMutasearch CCDC61
DgiDB (Drug Gene Interaction Database)CCDC61
DoCM (Curated mutations)CCDC61 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC61 (select a term)
intoGenCCDC61
Cancer3DCCDC61(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC61
Genetic Testing Registry CCDC61
NextProtQ9Y6R9 [Medical]
TSGene729440
GENETestsCCDC61
Huge Navigator CCDC61 [HugePedia]
snp3D : Map Gene to Disease729440
BioCentury BCIQCCDC61
ClinGenCCDC61
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729440
Chemical/Pharm GKB GenePA162381685
Clinical trialCCDC61
Miscellaneous
canSAR (ICR)CCDC61 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC61
EVEXCCDC61
GoPubMedCCDC61
iHOPCCDC61
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:58:37 CET 2017

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