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CCDC62 (coiled-coil domain containing 62)

Identity

Alias (NCBI)CT109
ERAP75
TSP-NY
HGNC (Hugo) CCDC62
HGNC Alias symbTSP-NY
FLJ40344
CT109
ERAP75
HGNC Alias namecancer/testis antigen 109
LocusID (NCBI) 84660
Atlas_Id 50903
Location 12q24.31  [Link to chromosome band 12q24]
Location_base_pair Starts at 122774572 and ends at 122827528 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CCDC62   30723
Cards
Entrez_Gene (NCBI)CCDC62    coiled-coil domain containing 62
AliasesCT109; ERAP75; TSP-NY
GeneCards (Weizmann)CCDC62
Ensembl hg19 (Hinxton)ENSG00000130783 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130783 [Gene_View]  ENSG00000130783 [Sequence]  chr12:122774572-122827528 [Contig_View]  CCDC62 [Vega]
ICGC DataPortalENSG00000130783
TCGA cBioPortalCCDC62
AceView (NCBI)CCDC62
Genatlas (Paris)CCDC62
SOURCE (Princeton)CCDC62
Genetics Home Reference (NIH)CCDC62
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC62  -     chr12:122774572-122827528 +  12q24.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC62  -     12q24.31   [Description]    (hg19-Feb_2009)
GoldenPathCCDC62 - 12q24.31 [CytoView hg19]  CCDC62 - 12q24.31 [CytoView hg38]
ImmunoBaseENSG00000130783
Genome Data Viewer NCBICCDC62 [Mapview hg19]  
OMIM613481   
Gene and transcription
Genbank (Entrez)AK097663 AK124633 AK292466 AW628007 AY009105
RefSeq transcript (Entrez)NM_032573 NM_201435
Consensus coding sequences : CCDS (NCBI)CCDC62
Gene ExpressionCCDC62 [ NCBI-GEO ]   CCDC62 [ EBI - ARRAY_EXPRESS ]   CCDC62 [ SEEK ]   CCDC62 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC62 [ Firebrowse - Broad ]
GenevisibleExpression of CCDC62 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84660
GTEX Portal (Tissue expression)CCDC62
Human Protein AtlasENSG00000130783-CCDC62 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P9F0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P9F0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P9F0
PhosPhoSitePlusQ6P9F0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC62
SuperfamilyQ6P9F0
AlphaFold pdb e-kbQ6P9F0   
Human Protein Atlas [tissue]ENSG00000130783-CCDC62 [tissue]
HPRD15575
Protein Interaction databases
DIP (DOE-UCLA)Q6P9F0
IntAct (EBI)Q6P9F0
BioGRIDCCDC62
STRING (EMBL)CCDC62
ZODIACCCDC62
Ontologies - Pathways
QuickGOQ6P9F0
Ontology : AmiGOblastocyst hatching  protein binding  nucleus  nucleoplasm  cytoplasm  plasma membrane  estrogen receptor binding  nuclear receptor coactivator activity  positive regulation of transcription by RNA polymerase II  positive regulation of transcription by RNA polymerase II  cellular response to estradiol stimulus  
Ontology : EGO-EBIblastocyst hatching  protein binding  nucleus  nucleoplasm  cytoplasm  plasma membrane  estrogen receptor binding  nuclear receptor coactivator activity  positive regulation of transcription by RNA polymerase II  positive regulation of transcription by RNA polymerase II  cellular response to estradiol stimulus  
NDEx NetworkCCDC62
Atlas of Cancer Signalling NetworkCCDC62
Wikipedia pathwaysCCDC62
Orthology - Evolution
OrthoDB84660
GeneTree (enSembl)ENSG00000130783
Phylogenetic Trees/Animal Genes : TreeFamCCDC62
Homologs : HomoloGeneCCDC62
Homology/Alignments : Family Browser (UCSC)CCDC62
Gene fusions - Rearrangements
Fusion : QuiverCCDC62
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC62 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC62
dbVarCCDC62
ClinVarCCDC62
MonarchCCDC62
1000_GenomesCCDC62 
Exome Variant ServerCCDC62
GNOMAD BrowserENSG00000130783
Varsome BrowserCCDC62
ACMGCCDC62 variants
VarityQ6P9F0
Genomic Variants (DGV)CCDC62 [DGVbeta]
DECIPHERCCDC62 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC62 
Mutations
ICGC Data PortalCCDC62 
TCGA Data PortalCCDC62 
Broad Tumor PortalCCDC62
OASIS PortalCCDC62 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC62  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCCDC62
Mutations and Diseases : HGMDCCDC62
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCCDC62
DgiDB (Drug Gene Interaction Database)CCDC62
DoCM (Curated mutations)CCDC62
CIViC (Clinical Interpretations of Variants in Cancer)CCDC62
Cancer3DCCDC62
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613481   
Orphanet
DisGeNETCCDC62
MedgenCCDC62
Genetic Testing Registry CCDC62
NextProtQ6P9F0 [Medical]
GENETestsCCDC62
Target ValidationCCDC62
Huge Navigator CCDC62 [HugePedia]
ClinGenCCDC62
Clinical trials, drugs, therapy
MyCancerGenomeCCDC62
Protein Interactions : CTDCCDC62
Pharm GKB GenePA143485414
PharosQ6P9F0
Clinical trialCCDC62
Miscellaneous
canSAR (ICR)CCDC62
HarmonizomeCCDC62
DataMed IndexCCDC62
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCCDC62
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:02:33 CEST 2021

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