Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CCDC62 (coiled-coil domain containing 62)

Identity

Alias_symbol (synonym)TSP-NY
FLJ40344
CT109
ERAP75
Other alias
HGNC (Hugo) CCDC62
LocusID (NCBI) 84660
Atlas_Id 50903
Location 12q24.31  [Link to chromosome band 12q24]
Location_base_pair Starts at 122774509 and ends at 122827380 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC62   30723
Cards
Entrez_Gene (NCBI)CCDC62  84660  coiled-coil domain containing 62
AliasesCT109; ERAP75; TSP-NY
GeneCards (Weizmann)CCDC62
Ensembl hg19 (Hinxton)ENSG00000130783 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130783 [Gene_View]  ENSG00000130783 [Sequence]  chr12:122774509-122827380 [Contig_View]  CCDC62 [Vega]
ICGC DataPortalENSG00000130783
TCGA cBioPortalCCDC62
AceView (NCBI)CCDC62
Genatlas (Paris)CCDC62
WikiGenes84660
SOURCE (Princeton)CCDC62
Genetics Home Reference (NIH)CCDC62
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC62  -     chr12:122774509-122827380 +  12q24.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC62  -     12q24.31   [Description]    (hg19-Feb_2009)
EnsemblCCDC62 - 12q24.31 [CytoView hg19]  CCDC62 - 12q24.31 [CytoView hg38]
Mapping of homologs : NCBICCDC62 [Mapview hg19]  CCDC62 [Mapview hg38]
OMIM613481   
Gene and transcription
Genbank (Entrez)AK097663 AK124633 AK292466 AW628007 AY009105
RefSeq transcript (Entrez)NM_032573 NM_201435
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC62
Cluster EST : UnigeneHs.592008 [ NCBI ]
CGAP (NCI)Hs.592008
Alternative Splicing GalleryENSG00000130783
Gene ExpressionCCDC62 [ NCBI-GEO ]   CCDC62 [ EBI - ARRAY_EXPRESS ]   CCDC62 [ SEEK ]   CCDC62 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC62 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84660
GTEX Portal (Tissue expression)CCDC62
Human Protein AtlasENSG00000130783-CCDC62 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P9F0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P9F0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P9F0
Splice isoforms : SwissVarQ6P9F0
PhosPhoSitePlusQ6P9F0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC62
DMDM Disease mutations84660
Blocks (Seattle)CCDC62
SuperfamilyQ6P9F0
Human Protein Atlas [tissue]ENSG00000130783-CCDC62 [tissue]
Peptide AtlasQ6P9F0
HPRD15575
IPIIPI00402053   IPI00185659   IPI00759750   IPI01010214   
Protein Interaction databases
DIP (DOE-UCLA)Q6P9F0
IntAct (EBI)Q6P9F0
FunCoupENSG00000130783
BioGRIDCCDC62
STRING (EMBL)CCDC62
ZODIACCCDC62
Ontologies - Pathways
QuickGOQ6P9F0
Ontology : AmiGOprotein binding  nucleus  nucleoplasm  cytoplasm  plasma membrane  estrogen receptor binding  nuclear receptor transcription coactivator activity  positive regulation of transcription by RNA polymerase II  positive regulation of transcription by RNA polymerase II  cellular response to estradiol stimulus  
Ontology : EGO-EBIprotein binding  nucleus  nucleoplasm  cytoplasm  plasma membrane  estrogen receptor binding  nuclear receptor transcription coactivator activity  positive regulation of transcription by RNA polymerase II  positive regulation of transcription by RNA polymerase II  cellular response to estradiol stimulus  
NDEx NetworkCCDC62
Atlas of Cancer Signalling NetworkCCDC62
Wikipedia pathwaysCCDC62
Orthology - Evolution
OrthoDB84660
GeneTree (enSembl)ENSG00000130783
Phylogenetic Trees/Animal Genes : TreeFamCCDC62
HOVERGENQ6P9F0
HOGENOMQ6P9F0
Homologs : HomoloGeneCCDC62
Homology/Alignments : Family Browser (UCSC)CCDC62
Gene fusions - Rearrangements
Fusion : QuiverCCDC62
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC62 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC62
dbVarCCDC62
ClinVarCCDC62
1000_GenomesCCDC62 
Exome Variant ServerCCDC62
ExAC (Exome Aggregation Consortium)ENSG00000130783
GNOMAD BrowserENSG00000130783
Varsome BrowserCCDC62
Genetic variants : HAPMAP84660
Genomic Variants (DGV)CCDC62 [DGVbeta]
DECIPHERCCDC62 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC62 
Mutations
ICGC Data PortalCCDC62 
TCGA Data PortalCCDC62 
Broad Tumor PortalCCDC62
OASIS PortalCCDC62 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC62  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC62
BioMutasearch CCDC62
DgiDB (Drug Gene Interaction Database)CCDC62
DoCM (Curated mutations)CCDC62 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC62 (select a term)
intoGenCCDC62
Cancer3DCCDC62(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613481   
Orphanet
DisGeNETCCDC62
MedgenCCDC62
Genetic Testing Registry CCDC62
NextProtQ6P9F0 [Medical]
TSGene84660
GENETestsCCDC62
Target ValidationCCDC62
Huge Navigator CCDC62 [HugePedia]
snp3D : Map Gene to Disease84660
BioCentury BCIQCCDC62
ClinGenCCDC62
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84660
Chemical/Pharm GKB GenePA143485414
Clinical trialCCDC62
Miscellaneous
canSAR (ICR)CCDC62 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC62
EVEXCCDC62
GoPubMedCCDC62
iHOPCCDC62
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 10:56:10 CET 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.