Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CCDC64 (coiled-coil domain containing 64)

Identity

Other aliasBICDR-1
H_267D11.1
HGNC (Hugo) CCDC64
LocusID (NCBI) 92558
Atlas_Id 61556
Location 12q24.23  [Link to chromosome band 12q24]
Location_base_pair Starts at 120427648 and ends at 120532299 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CCDC64 (12q24.23) / GALNT9 (12q24.33)CCDC64 (12q24.23) / SLC4A2 (7q36.1)PLS3 (Xq23) / CCDC64 (12q24.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC64   28095
Cards
Entrez_Gene (NCBI)CCDC64  92558  coiled-coil domain containing 64
AliasesBICDR-1; H_267D11.1
GeneCards (Weizmann)CCDC64
Ensembl hg19 (Hinxton)ENSG00000135127 [Gene_View]  chr12:120427648-120532299 [Contig_View]  CCDC64 [Vega]
Ensembl hg38 (Hinxton)ENSG00000135127 [Gene_View]  chr12:120427648-120532299 [Contig_View]  CCDC64 [Vega]
ICGC DataPortalENSG00000135127
TCGA cBioPortalCCDC64
AceView (NCBI)CCDC64
Genatlas (Paris)CCDC64
WikiGenes92558
SOURCE (Princeton)CCDC64
Genetics Home Reference (NIH)CCDC64
Genomic and cartography
GoldenPath hg19 (UCSC)CCDC64  -     chr12:120427648-120532299 +  12q24.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCDC64  -     12q24.23   [Description]    (hg38-Dec_2013)
EnsemblCCDC64 - 12q24.23 [CytoView hg19]  CCDC64 - 12q24.23 [CytoView hg38]
Mapping of homologs : NCBICCDC64 [Mapview hg19]  CCDC64 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK129960 AK297888 AK301580 U88834
RefSeq transcript (Entrez)NM_207311
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929385
Consensus coding sequences : CCDS (NCBI)CCDC64
Cluster EST : UnigeneHs.369763 [ NCBI ]
CGAP (NCI)Hs.369763
Alternative Splicing GalleryENSG00000135127
Gene ExpressionCCDC64 [ NCBI-GEO ]   CCDC64 [ EBI - ARRAY_EXPRESS ]   CCDC64 [ SEEK ]   CCDC64 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC64 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92558
GTEX Portal (Tissue expression)CCDC64
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZP65   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZP65  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZP65
Splice isoforms : SwissVarQ6ZP65
PhosPhoSitePlusQ6ZP65
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC64
DMDM Disease mutations92558
Blocks (Seattle)CCDC64
SuperfamilyQ6ZP65
Human Protein AtlasENSG00000135127
Peptide AtlasQ6ZP65
HPRD14292
IPIIPI00873532   IPI00792219   IPI00418658   IPI01022507   IPI01023031   IPI01021100   IPI00973366   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZP65
IntAct (EBI)Q6ZP65
FunCoupENSG00000135127
BioGRIDCCDC64
STRING (EMBL)CCDC64
ZODIACCCDC64
Ontologies - Pathways
QuickGOQ6ZP65
Ontology : AmiGOcytoplasm  centrosome  Rab GTPase binding  neuron projection development  dynactin binding  Golgi to secretory granule transport  
Ontology : EGO-EBIcytoplasm  centrosome  Rab GTPase binding  neuron projection development  dynactin binding  Golgi to secretory granule transport  
NDEx NetworkCCDC64
Atlas of Cancer Signalling NetworkCCDC64
Wikipedia pathwaysCCDC64
Orthology - Evolution
OrthoDB92558
GeneTree (enSembl)ENSG00000135127
Phylogenetic Trees/Animal Genes : TreeFamCCDC64
HOVERGENQ6ZP65
HOGENOMQ6ZP65
Homologs : HomoloGeneCCDC64
Homology/Alignments : Family Browser (UCSC)CCDC64
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC64 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC64
dbVarCCDC64
ClinVarCCDC64
1000_GenomesCCDC64 
Exome Variant ServerCCDC64
ExAC (Exome Aggregation Consortium)CCDC64 (select the gene name)
Genetic variants : HAPMAP92558
Genomic Variants (DGV)CCDC64 [DGVbeta]
DECIPHER (Syndromes)12:120427648-120532299  ENSG00000135127
CONAN: Copy Number AnalysisCCDC64 
Mutations
ICGC Data PortalCCDC64 
TCGA Data PortalCCDC64 
Broad Tumor PortalCCDC64
OASIS PortalCCDC64 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC64  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC64
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC64
DgiDB (Drug Gene Interaction Database)CCDC64
DoCM (Curated mutations)CCDC64 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC64 (select a term)
intoGenCCDC64
Cancer3DCCDC64(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC64
Genetic Testing Registry CCDC64
NextProtQ6ZP65 [Medical]
TSGene92558
GENETestsCCDC64
Huge Navigator CCDC64 [HugePedia]
snp3D : Map Gene to Disease92558
BioCentury BCIQCCDC64
ClinGenCCDC64
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92558
Chemical/Pharm GKB GenePA143485416
Clinical trialCCDC64
Miscellaneous
canSAR (ICR)CCDC64 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC64
EVEXCCDC64
GoPubMedCCDC64
iHOPCCDC64
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:58:38 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.