Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CCDC64B (coiled-coil domain containing 64B)

Identity

Other aliasBICDR-2
HGNC (Hugo) CCDC64B
LocusID (NCBI) 146439
Atlas_Id 61557
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 3077868 and ends at 3085542 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SLC9A8 (20q13.13) / CCDC64B (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC64B   33584
Cards
Entrez_Gene (NCBI)CCDC64B  146439  coiled-coil domain containing 64B
AliasesBICDR-2
GeneCards (Weizmann)CCDC64B
Ensembl hg19 (Hinxton)ENSG00000162069 [Gene_View]  chr16:3077868-3085542 [Contig_View]  CCDC64B [Vega]
Ensembl hg38 (Hinxton)ENSG00000162069 [Gene_View]  chr16:3077868-3085542 [Contig_View]  CCDC64B [Vega]
ICGC DataPortalENSG00000162069
TCGA cBioPortalCCDC64B
AceView (NCBI)CCDC64B
Genatlas (Paris)CCDC64B
WikiGenes146439
SOURCE (Princeton)CCDC64B
Genetics Home Reference (NIH)CCDC64B
Genomic and cartography
GoldenPath hg19 (UCSC)CCDC64B  -     chr16:3077868-3085542 -  16p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCDC64B  -     16p13.3   [Description]    (hg38-Dec_2013)
EnsemblCCDC64B - 16p13.3 [CytoView hg19]  CCDC64B - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBICCDC64B [Mapview hg19]  CCDC64B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK307181 AL833717 AL833749 BC015446 BC128602
RefSeq transcript (Entrez)NM_001103175
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010393 NW_004929400
Consensus coding sequences : CCDS (NCBI)CCDC64B
Cluster EST : UnigeneHs.513285 [ NCBI ]
CGAP (NCI)Hs.513285
Alternative Splicing GalleryENSG00000162069
Gene ExpressionCCDC64B [ NCBI-GEO ]   CCDC64B [ EBI - ARRAY_EXPRESS ]   CCDC64B [ SEEK ]   CCDC64B [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC64B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146439
GTEX Portal (Tissue expression)CCDC64B
Protein : pattern, domain, 3D structure
UniProt/SwissProtA1A5D9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA1A5D9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA1A5D9
Splice isoforms : SwissVarA1A5D9
PhosPhoSitePlusA1A5D9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC64B
DMDM Disease mutations146439
Blocks (Seattle)CCDC64B
SuperfamilyA1A5D9
Human Protein AtlasENSG00000162069
Peptide AtlasA1A5D9
IPIIPI00095032   IPI00783304   
Protein Interaction databases
DIP (DOE-UCLA)A1A5D9
IntAct (EBI)A1A5D9
FunCoupENSG00000162069
BioGRIDCCDC64B
STRING (EMBL)CCDC64B
ZODIACCCDC64B
Ontologies - Pathways
QuickGOA1A5D9
Ontology : AmiGOprotein binding  Rab GTPase binding  
Ontology : EGO-EBIprotein binding  Rab GTPase binding  
NDEx NetworkCCDC64B
Atlas of Cancer Signalling NetworkCCDC64B
Wikipedia pathwaysCCDC64B
Orthology - Evolution
OrthoDB146439
GeneTree (enSembl)ENSG00000162069
Phylogenetic Trees/Animal Genes : TreeFamCCDC64B
HOVERGENA1A5D9
HOGENOMA1A5D9
Homologs : HomoloGeneCCDC64B
Homology/Alignments : Family Browser (UCSC)CCDC64B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC64B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC64B
dbVarCCDC64B
ClinVarCCDC64B
1000_GenomesCCDC64B 
Exome Variant ServerCCDC64B
ExAC (Exome Aggregation Consortium)CCDC64B (select the gene name)
Genetic variants : HAPMAP146439
Genomic Variants (DGV)CCDC64B [DGVbeta]
DECIPHER (Syndromes)16:3077868-3085542  ENSG00000162069
CONAN: Copy Number AnalysisCCDC64B 
Mutations
ICGC Data PortalCCDC64B 
TCGA Data PortalCCDC64B 
Broad Tumor PortalCCDC64B
OASIS PortalCCDC64B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC64B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC64B
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch CCDC64B
DgiDB (Drug Gene Interaction Database)CCDC64B
DoCM (Curated mutations)CCDC64B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC64B (select a term)
intoGenCCDC64B
Cancer3DCCDC64B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC64B
Genetic Testing Registry CCDC64B
NextProtA1A5D9 [Medical]
TSGene146439
GENETestsCCDC64B
Huge Navigator CCDC64B [HugePedia]
snp3D : Map Gene to Disease146439
BioCentury BCIQCCDC64B
ClinGenCCDC64B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146439
Chemical/Pharm GKB GenePA162381686
Clinical trialCCDC64B
Miscellaneous
canSAR (ICR)CCDC64B (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC64B
EVEXCCDC64B
GoPubMedCCDC64B
iHOPCCDC64B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:58:38 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.