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CCDC65 (coiled-coil domain containing 65)

Identity

Alias_symbol (synonym)NYD-SP28
FLJ35732
FAP250
CFAP250
CILD27
DRC2
Other alias
HGNC (Hugo) CCDC65
LocusID (NCBI) 85478
Atlas_Id 61558
Location 12q13.12  [Link to chromosome band 12q13]
Location_base_pair Starts at 48904110 and ends at 48921576 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC65   29937
Cards
Entrez_Gene (NCBI)CCDC65  85478  coiled-coil domain containing 65
AliasesCFAP250; DRC2; FAP250; NYD-SP28
GeneCards (Weizmann)CCDC65
Ensembl hg19 (Hinxton)ENSG00000139537 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139537 [Gene_View]  chr12:48904110-48921576 [Contig_View]  CCDC65 [Vega]
ICGC DataPortalENSG00000139537
TCGA cBioPortalCCDC65
AceView (NCBI)CCDC65
Genatlas (Paris)CCDC65
WikiGenes85478
SOURCE (Princeton)CCDC65
Genetics Home Reference (NIH)CCDC65
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC65  -     chr12:48904110-48921576 +  12q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC65  -     12q13.12   [Description]    (hg19-Feb_2009)
EnsemblCCDC65 - 12q13.12 [CytoView hg19]  CCDC65 - 12q13.12 [CytoView hg38]
Mapping of homologs : NCBICCDC65 [Mapview hg19]  CCDC65 [Mapview hg38]
OMIM611088   615504   
Gene and transcription
Genbank (Entrez)AF382188 AK093051 AK098529 AK302082 AK314623
RefSeq transcript (Entrez)NM_001286957 NM_033124
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC65
Cluster EST : UnigeneHs.512805 [ NCBI ]
CGAP (NCI)Hs.512805
Alternative Splicing GalleryENSG00000139537
Gene ExpressionCCDC65 [ NCBI-GEO ]   CCDC65 [ EBI - ARRAY_EXPRESS ]   CCDC65 [ SEEK ]   CCDC65 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC65 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85478
GTEX Portal (Tissue expression)CCDC65
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IXS2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IXS2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IXS2
Splice isoforms : SwissVarQ8IXS2
PhosPhoSitePlusQ8IXS2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC65
DMDM Disease mutations85478
Blocks (Seattle)CCDC65
SuperfamilyQ8IXS2
Human Protein AtlasENSG00000139537
Peptide AtlasQ8IXS2
HPRD14867
IPIIPI00300466   IPI00167201   IPI01021450   IPI01021790   
Protein Interaction databases
DIP (DOE-UCLA)Q8IXS2
IntAct (EBI)Q8IXS2
FunCoupENSG00000139537
BioGRIDCCDC65
STRING (EMBL)CCDC65
ZODIACCCDC65
Ontologies - Pathways
QuickGOQ8IXS2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC65
Atlas of Cancer Signalling NetworkCCDC65
Wikipedia pathwaysCCDC65
Orthology - Evolution
OrthoDB85478
GeneTree (enSembl)ENSG00000139537
Phylogenetic Trees/Animal Genes : TreeFamCCDC65
HOVERGENQ8IXS2
HOGENOMQ8IXS2
Homologs : HomoloGeneCCDC65
Homology/Alignments : Family Browser (UCSC)CCDC65
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC65 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC65
dbVarCCDC65
ClinVarCCDC65
1000_GenomesCCDC65 
Exome Variant ServerCCDC65
ExAC (Exome Aggregation Consortium)CCDC65 (select the gene name)
Genetic variants : HAPMAP85478
Genomic Variants (DGV)CCDC65 [DGVbeta]
DECIPHERCCDC65 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC65 
Mutations
ICGC Data PortalCCDC65 
TCGA Data PortalCCDC65 
Broad Tumor PortalCCDC65
OASIS PortalCCDC65 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC65  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC65
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC65
DgiDB (Drug Gene Interaction Database)CCDC65
DoCM (Curated mutations)CCDC65 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC65 (select a term)
intoGenCCDC65
Cancer3DCCDC65(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611088    615504   
Orphanet665   
MedgenCCDC65
Genetic Testing Registry CCDC65
NextProtQ8IXS2 [Medical]
TSGene85478
GENETestsCCDC65
Target ValidationCCDC65
Huge Navigator CCDC65 [HugePedia]
snp3D : Map Gene to Disease85478
BioCentury BCIQCCDC65
ClinGenCCDC65
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85478
Chemical/Pharm GKB GenePA143485417
Clinical trialCCDC65
Miscellaneous
canSAR (ICR)CCDC65 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC65
EVEXCCDC65
GoPubMedCCDC65
iHOPCCDC65
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:42:40 CEST 2017

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