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CCDC68 (coiled-coil domain containing 68)

Identity

Alias_symbol (synonym)SE57-1
Other alias
HGNC (Hugo) CCDC68
LocusID (NCBI) 80323
Atlas_Id 42235
Location 18q21.2  [Link to chromosome band 18q21]
Location_base_pair Starts at 54901509 and ends at 54958048 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC68   24350
Cards
Entrez_Gene (NCBI)CCDC68  80323  coiled-coil domain containing 68
AliasesSE57-1
GeneCards (Weizmann)CCDC68
Ensembl hg19 (Hinxton)ENSG00000166510 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166510 [Gene_View]  chr18:54901509-54958048 [Contig_View]  CCDC68 [Vega]
ICGC DataPortalENSG00000166510
TCGA cBioPortalCCDC68
AceView (NCBI)CCDC68
Genatlas (Paris)CCDC68
WikiGenes80323
SOURCE (Princeton)CCDC68
Genetics Home Reference (NIH)CCDC68
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC68  -     chr18:54901509-54958048 -  18q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC68  -     18q21.2   [Description]    (hg19-Feb_2009)
EnsemblCCDC68 - 18q21.2 [CytoView hg19]  CCDC68 - 18q21.2 [CytoView hg38]
Mapping of homologs : NCBICCDC68 [Mapview hg19]  CCDC68 [Mapview hg38]
OMIM616909   
Gene and transcription
Genbank (Entrez)AF273051 AI823801 AK058097 AK313793 BC029508
RefSeq transcript (Entrez)NM_001143829 NM_025214
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC68
Cluster EST : UnigeneHs.120790 [ NCBI ]
CGAP (NCI)Hs.120790
Alternative Splicing GalleryENSG00000166510
Gene ExpressionCCDC68 [ NCBI-GEO ]   CCDC68 [ EBI - ARRAY_EXPRESS ]   CCDC68 [ SEEK ]   CCDC68 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC68 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80323
GTEX Portal (Tissue expression)CCDC68
Human Protein AtlasENSG00000166510-CCDC68 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H2F9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H2F9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H2F9
Splice isoforms : SwissVarQ9H2F9
PhosPhoSitePlusQ9H2F9
Domains : Interpro (EBI)Ccdc68   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC68
DMDM Disease mutations80323
Blocks (Seattle)CCDC68
SuperfamilyQ9H2F9
Human Protein Atlas [tissue]ENSG00000166510-CCDC68 [tissue]
Peptide AtlasQ9H2F9
HPRD18034
IPIIPI00018854   
Protein Interaction databases
DIP (DOE-UCLA)Q9H2F9
IntAct (EBI)Q9H2F9
FunCoupENSG00000166510
BioGRIDCCDC68
STRING (EMBL)CCDC68
ZODIACCCDC68
Ontologies - Pathways
QuickGOQ9H2F9
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkCCDC68
Atlas of Cancer Signalling NetworkCCDC68
Wikipedia pathwaysCCDC68
Orthology - Evolution
OrthoDB80323
GeneTree (enSembl)ENSG00000166510
Phylogenetic Trees/Animal Genes : TreeFamCCDC68
HOVERGENQ9H2F9
HOGENOMQ9H2F9
Homologs : HomoloGeneCCDC68
Homology/Alignments : Family Browser (UCSC)CCDC68
Gene fusions - Rearrangements
Tumor Fusion PortalCCDC68
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC68 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC68
dbVarCCDC68
ClinVarCCDC68
1000_GenomesCCDC68 
Exome Variant ServerCCDC68
ExAC (Exome Aggregation Consortium)ENSG00000166510
GNOMAD BrowserENSG00000166510
Genetic variants : HAPMAP80323
Genomic Variants (DGV)CCDC68 [DGVbeta]
DECIPHERCCDC68 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC68 
Mutations
ICGC Data PortalCCDC68 
TCGA Data PortalCCDC68 
Broad Tumor PortalCCDC68
OASIS PortalCCDC68 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC68  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC68
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC68
DgiDB (Drug Gene Interaction Database)CCDC68
DoCM (Curated mutations)CCDC68 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC68 (select a term)
intoGenCCDC68
Cancer3DCCDC68(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616909   
Orphanet
DisGeNETCCDC68
MedgenCCDC68
Genetic Testing Registry CCDC68
NextProtQ9H2F9 [Medical]
TSGene80323
GENETestsCCDC68
Target ValidationCCDC68
Huge Navigator CCDC68 [HugePedia]
snp3D : Map Gene to Disease80323
BioCentury BCIQCCDC68
ClinGenCCDC68
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80323
Chemical/Pharm GKB GenePA143485420
Clinical trialCCDC68
Miscellaneous
canSAR (ICR)CCDC68 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC68
EVEXCCDC68
GoPubMedCCDC68
iHOPCCDC68
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:06:17 CET 2017

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