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CCDC69 (coiled-coil domain containing 69)

Identity

Alias_symbol (synonym)FLJ13705
DKFZP434C171
Other alias-
HGNC (Hugo) CCDC69
LocusID (NCBI) 26112
Atlas_Id 61560
Location 5q33.1  [Link to chromosome band 5q33]
Location_base_pair Starts at 151181052 and ends at 151224093 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCDC69 (5q33.1) / DUSP1 (5q35.1)CCDC69 (5q33.1) / SLC35D2 (9q22.32)CCDC69 (5q33.1) / SPTLC3 (20p12.1)
CCDC69 (5q33.1) / UGDH (4p14)PABPC1P10 () / CCDC69 (5q33.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC69   24487
Cards
Entrez_Gene (NCBI)CCDC69  26112  coiled-coil domain containing 69
Aliases
GeneCards (Weizmann)CCDC69
Ensembl hg19 (Hinxton)ENSG00000198624 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198624 [Gene_View]  chr5:151181052-151224093 [Contig_View]  CCDC69 [Vega]
ICGC DataPortalENSG00000198624
TCGA cBioPortalCCDC69
AceView (NCBI)CCDC69
Genatlas (Paris)CCDC69
WikiGenes26112
SOURCE (Princeton)CCDC69
Genetics Home Reference (NIH)CCDC69
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC69  -     chr5:151181052-151224093 -  5q33.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC69  -     5q33.1   [Description]    (hg19-Feb_2009)
EnsemblCCDC69 - 5q33.1 [CytoView hg19]  CCDC69 - 5q33.1 [CytoView hg38]
Mapping of homologs : NCBICCDC69 [Mapview hg19]  CCDC69 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023767 AK094658 AK225826 AK292841 AK298063
RefSeq transcript (Entrez)NM_015621
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC69
Cluster EST : UnigeneHs.655336 [ NCBI ]
CGAP (NCI)Hs.655336
Alternative Splicing GalleryENSG00000198624
Gene ExpressionCCDC69 [ NCBI-GEO ]   CCDC69 [ EBI - ARRAY_EXPRESS ]   CCDC69 [ SEEK ]   CCDC69 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC69 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26112
GTEX Portal (Tissue expression)CCDC69
Human Protein AtlasENSG00000198624-CCDC69 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NI79   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NI79  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NI79
Splice isoforms : SwissVarA6NI79
PhosPhoSitePlusA6NI79
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC69
DMDM Disease mutations26112
Blocks (Seattle)CCDC69
SuperfamilyA6NI79
Human Protein Atlas [tissue]ENSG00000198624-CCDC69 [tissue]
Peptide AtlasA6NI79
HPRD13152
IPIIPI00410093   IPI00908981   IPI00985152   IPI00024074   IPI00973970   IPI00982524   
Protein Interaction databases
DIP (DOE-UCLA)A6NI79
IntAct (EBI)A6NI79
FunCoupENSG00000198624
BioGRIDCCDC69
STRING (EMBL)CCDC69
ZODIACCCDC69
Ontologies - Pathways
QuickGOA6NI79
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC69
Atlas of Cancer Signalling NetworkCCDC69
Wikipedia pathwaysCCDC69
Orthology - Evolution
OrthoDB26112
GeneTree (enSembl)ENSG00000198624
Phylogenetic Trees/Animal Genes : TreeFamCCDC69
HOVERGENA6NI79
HOGENOMA6NI79
Homologs : HomoloGeneCCDC69
Homology/Alignments : Family Browser (UCSC)CCDC69
Gene fusions - Rearrangements
Tumor Fusion PortalCCDC69
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC69 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC69
dbVarCCDC69
ClinVarCCDC69
1000_GenomesCCDC69 
Exome Variant ServerCCDC69
ExAC (Exome Aggregation Consortium)ENSG00000198624
GNOMAD BrowserENSG00000198624
Genetic variants : HAPMAP26112
Genomic Variants (DGV)CCDC69 [DGVbeta]
DECIPHERCCDC69 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC69 
Mutations
ICGC Data PortalCCDC69 
TCGA Data PortalCCDC69 
Broad Tumor PortalCCDC69
OASIS PortalCCDC69 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC69  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC69
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC69
DgiDB (Drug Gene Interaction Database)CCDC69
DoCM (Curated mutations)CCDC69 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC69 (select a term)
intoGenCCDC69
Cancer3DCCDC69(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCDC69
MedgenCCDC69
Genetic Testing Registry CCDC69
NextProtA6NI79 [Medical]
TSGene26112
GENETestsCCDC69
Target ValidationCCDC69
Huge Navigator CCDC69 [HugePedia]
snp3D : Map Gene to Disease26112
BioCentury BCIQCCDC69
ClinGenCCDC69
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26112
Chemical/Pharm GKB GenePA128394640
Clinical trialCCDC69
Miscellaneous
canSAR (ICR)CCDC69 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC69
EVEXCCDC69
GoPubMedCCDC69
iHOPCCDC69
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:11:32 CET 2017

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