Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CCDC7 (coiled-coil domain containing 7)

Identity

Alias_namesC10orf68
chromosome 10 open reading frame 68
Alias_symbol (synonym)FLJ32762
FLJ13031
BIOT2
Other aliasBioT2-A
BioT2-B
BioT2-C
HGNC (Hugo) CCDC7
LocusID (NCBI) 221016
Atlas_Id 52188
Location 10p11.22  [Link to chromosome band 10p11]
Location_base_pair Starts at 32446082 and ends at 32574564 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)		CCDC7 (10p11.22) / CCDC7 (10p11.22)CCDC7 (10p11.22) / TAOK1 (17q11.2)CCDC7 (10p11.22) / UBE2D1 (10q21.1)
C10orf68 CCDC7 10p11.22

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Small Cell Carcinoma

External links

Nomenclature
HGNC (Hugo)CCDC7   26533
Cards
Entrez_Gene (NCBI)CCDC7  221016  coiled-coil domain containing 7
AliasesBIOT2; BioT2-A; BioT2-B; BioT2-C; 
C10orf68
GeneCards (Weizmann)CCDC7
Ensembl hg19 (Hinxton)ENSG00000150076 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000150076 [Gene_View]  chr10:32446082-32574564 [Contig_View]  CCDC7 [Vega]
ICGC DataPortalENSG00000150076
TCGA cBioPortalCCDC7
AceView (NCBI)CCDC7
Genatlas (Paris)CCDC7
WikiGenes221016
SOURCE (Princeton)CCDC7
Genetics Home Reference (NIH)CCDC7
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC7  -     chr10:32446082-32574564 +  10p11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC7  -     10p11.22   [Description]    (hg19-Feb_2009)
EnsemblCCDC7 - 10p11.22 [CytoView hg19]  CCDC7 - 10p11.22 [CytoView hg38]
Mapping of homologs : NCBICCDC7 [Mapview hg19]  CCDC7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA401575 AK023093 AK057324 AK058148 AK097668
RefSeq transcript (Entrez)NM_001026383 NM_001321115 NM_024688 NM_145023
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC7
Cluster EST : UnigeneHs.585464 [ NCBI ]
CGAP (NCI)Hs.585464
Alternative Splicing GalleryENSG00000150076
Gene ExpressionCCDC7 [ NCBI-GEO ]   CCDC7 [ EBI - ARRAY_EXPRESS ]   CCDC7 [ SEEK ]   CCDC7 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221016
GTEX Portal (Tissue expression)CCDC7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96M83   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96M83  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96M83
Splice isoforms : SwissVarQ96M83
PhosPhoSitePlusQ96M83
Domains : Interpro (EBI)CCDC7   
Domain families : Pfam (Sanger)BioT2 (PF15368)   
Domain families : Pfam (NCBI)pfam15368   
Conserved Domain (NCBI)CCDC7
DMDM Disease mutations221016
Blocks (Seattle)CCDC7
SuperfamilyQ96M83
Human Protein AtlasENSG00000150076
Peptide AtlasQ96M83
HPRD10698
IPIIPI00413658   IPI00607785   IPI00972981   IPI00853581   IPI00878305   
Protein Interaction databases
DIP (DOE-UCLA)Q96M83
IntAct (EBI)Q96M83
FunCoupENSG00000150076
BioGRIDCCDC7
STRING (EMBL)CCDC7
ZODIACCCDC7
Ontologies - Pathways
QuickGOQ96M83
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC7
Atlas of Cancer Signalling NetworkCCDC7
Wikipedia pathwaysCCDC7
Orthology - Evolution
OrthoDB221016
GeneTree (enSembl)ENSG00000150076
Phylogenetic Trees/Animal Genes : TreeFamCCDC7
HOVERGENQ96M83
HOGENOMQ96M83
Homologs : HomoloGeneCCDC7
Homology/Alignments : Family Browser (UCSC)CCDC7
Gene fusions - Rearrangements
Fusion : MitelmanCCDC7/CCDC7 [10p11.22/10p11.22]  
Fusion : MitelmanCCDC7/CCDC7 [10p11.22/10p11.22]  [t(10;10)(p11;p11)]  
Fusion : MitelmanCCDC7/UBE2D1 [10p11.22/10q21.1]  [t(10;10)(p11;q21)]  
Fusion: TCGAC10orf68 CCDC7 10p11.22 BLCA BRCA KIRC LUAD PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC7
dbVarCCDC7
ClinVarCCDC7
1000_GenomesCCDC7 
Exome Variant ServerCCDC7
ExAC (Exome Aggregation Consortium)CCDC7 (select the gene name)
Genetic variants : HAPMAP221016
Genomic Variants (DGV)CCDC7 [DGVbeta]
DECIPHERCCDC7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC7 
Mutations
ICGC Data PortalCCDC7 
TCGA Data PortalCCDC7 
Broad Tumor PortalCCDC7
OASIS PortalCCDC7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC7
DgiDB (Drug Gene Interaction Database)CCDC7
DoCM (Curated mutations)CCDC7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC7 (select a term)
intoGenCCDC7
Cancer3DCCDC7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC7
Genetic Testing Registry CCDC7
NextProtQ96M83 [Medical]
TSGene221016
GENETestsCCDC7
Target ValidationCCDC7
Huge Navigator CCDC7 [HugePedia]
snp3D : Map Gene to Disease221016
BioCentury BCIQCCDC7
ClinGenCCDC7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221016
Chemical/Pharm GKB GenePA134879457
Clinical trialCCDC7
Miscellaneous
canSAR (ICR)CCDC7 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC7
EVEXCCDC7
GoPubMedCCDC7
iHOPCCDC7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:27:00 CEST 2017
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