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CCDC70 (coiled-coil domain containing 70)

Identity

Alias_symbol (synonym)DKFZP434K1172
FLJ25853
Other alias-
HGNC (Hugo) CCDC70
LocusID (NCBI) 83446
Atlas_Id 61561
Location 13q14.3  [Link to chromosome band 13q14]
Location_base_pair Starts at 51861948 and ends at 51866236 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC70   25303
Cards
Entrez_Gene (NCBI)CCDC70  83446  coiled-coil domain containing 70
Aliases
GeneCards (Weizmann)CCDC70
Ensembl hg19 (Hinxton)ENSG00000123171 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000123171 [Gene_View]  chr13:51861948-51866236 [Contig_View]  CCDC70 [Vega]
ICGC DataPortalENSG00000123171
TCGA cBioPortalCCDC70
AceView (NCBI)CCDC70
Genatlas (Paris)CCDC70
WikiGenes83446
SOURCE (Princeton)CCDC70
Genetics Home Reference (NIH)CCDC70
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC70  -     chr13:51861948-51866236 +  13q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC70  -     13q14.3   [Description]    (hg19-Feb_2009)
EnsemblCCDC70 - 13q14.3 [CytoView hg19]  CCDC70 - 13q14.3 [CytoView hg38]
Mapping of homologs : NCBICCDC70 [Mapview hg19]  CCDC70 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK098719 AK225745 AL136887 BC069691 BC069748
RefSeq transcript (Entrez)NM_001346075 NM_031290
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC70
Cluster EST : UnigeneHs.120573 [ NCBI ]
CGAP (NCI)Hs.120573
Alternative Splicing GalleryENSG00000123171
Gene ExpressionCCDC70 [ NCBI-GEO ]   CCDC70 [ EBI - ARRAY_EXPRESS ]   CCDC70 [ SEEK ]   CCDC70 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC70 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83446
GTEX Portal (Tissue expression)CCDC70
Human Protein AtlasENSG00000123171-CCDC70 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NSX1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NSX1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NSX1
Splice isoforms : SwissVarQ6NSX1
PhosPhoSitePlusQ6NSX1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC70
DMDM Disease mutations83446
Blocks (Seattle)CCDC70
SuperfamilyQ6NSX1
Human Protein Atlas [tissue]ENSG00000123171-CCDC70 [tissue]
Peptide AtlasQ6NSX1
HPRD13158
IPIIPI00550289   
Protein Interaction databases
DIP (DOE-UCLA)Q6NSX1
IntAct (EBI)Q6NSX1
FunCoupENSG00000123171
BioGRIDCCDC70
STRING (EMBL)CCDC70
ZODIACCCDC70
Ontologies - Pathways
QuickGOQ6NSX1
Ontology : AmiGOprotein binding  extracellular region  plasma membrane  
Ontology : EGO-EBIprotein binding  extracellular region  plasma membrane  
NDEx NetworkCCDC70
Atlas of Cancer Signalling NetworkCCDC70
Wikipedia pathwaysCCDC70
Orthology - Evolution
OrthoDB83446
GeneTree (enSembl)ENSG00000123171
Phylogenetic Trees/Animal Genes : TreeFamCCDC70
HOVERGENQ6NSX1
HOGENOMQ6NSX1
Homologs : HomoloGeneCCDC70
Homology/Alignments : Family Browser (UCSC)CCDC70
Gene fusions - Rearrangements
Tumor Fusion PortalCCDC70
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC70 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC70
dbVarCCDC70
ClinVarCCDC70
1000_GenomesCCDC70 
Exome Variant ServerCCDC70
ExAC (Exome Aggregation Consortium)ENSG00000123171
GNOMAD BrowserENSG00000123171
Genetic variants : HAPMAP83446
Genomic Variants (DGV)CCDC70 [DGVbeta]
DECIPHERCCDC70 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC70 
Mutations
ICGC Data PortalCCDC70 
TCGA Data PortalCCDC70 
Broad Tumor PortalCCDC70
OASIS PortalCCDC70 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC70  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC70
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC70
DgiDB (Drug Gene Interaction Database)CCDC70
DoCM (Curated mutations)CCDC70 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC70 (select a term)
intoGenCCDC70
Cancer3DCCDC70(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCDC70
MedgenCCDC70
Genetic Testing Registry CCDC70
NextProtQ6NSX1 [Medical]
TSGene83446
GENETestsCCDC70
Target ValidationCCDC70
Huge Navigator CCDC70 [HugePedia]
snp3D : Map Gene to Disease83446
BioCentury BCIQCCDC70
ClinGenCCDC70
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83446
Chemical/Pharm GKB GenePA143485421
Clinical trialCCDC70
Miscellaneous
canSAR (ICR)CCDC70 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC70
EVEXCCDC70
GoPubMedCCDC70
iHOPCCDC70
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:27:51 CET 2017

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