Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CCDC71 (coiled-coil domain containing 71)

Identity

Alias_symbol (synonym)FLJ12800
Other alias-
HGNC (Hugo) CCDC71
LocusID (NCBI) 64925
Atlas_Id 61562
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 49162535 and ends at 49166352 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)		CCDC71 (3p21.31) / TTC3 (21q22.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CCDC71   25760
Cards
Entrez_Gene (NCBI)CCDC71  64925  coiled-coil domain containing 71
Aliases
GeneCards (Weizmann)CCDC71
Ensembl hg19 (Hinxton)ENSG00000177352 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177352 [Gene_View]  chr3:49162535-49166352 [Contig_View]  CCDC71 [Vega]
ICGC DataPortalENSG00000177352
TCGA cBioPortalCCDC71
AceView (NCBI)CCDC71
Genatlas (Paris)CCDC71
WikiGenes64925
SOURCE (Princeton)CCDC71
Genetics Home Reference (NIH)CCDC71
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC71  -     chr3:49162535-49166352 -  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC71  -     3p21.31   [Description]    (hg19-Feb_2009)
EnsemblCCDC71 - 3p21.31 [CytoView hg19]  CCDC71 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBICCDC71 [Mapview hg19]  CCDC71 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK022862 AK023691 AK098658 BC035516 BC071960
RefSeq transcript (Entrez)NM_022903
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC71
Cluster EST : UnigeneHs.211472 [ NCBI ]
CGAP (NCI)Hs.211472
Alternative Splicing GalleryENSG00000177352
Gene ExpressionCCDC71 [ NCBI-GEO ]   CCDC71 [ EBI - ARRAY_EXPRESS ]   CCDC71 [ SEEK ]   CCDC71 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC71 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64925
GTEX Portal (Tissue expression)CCDC71
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IV32   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IV32  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IV32
Splice isoforms : SwissVarQ8IV32
PhosPhoSitePlusQ8IV32
Domains : Interpro (EBI)Ccdc71/71L   
Domain families : Pfam (Sanger)CCDC71L (PF15374)   
Domain families : Pfam (NCBI)pfam15374   
Conserved Domain (NCBI)CCDC71
DMDM Disease mutations64925
Blocks (Seattle)CCDC71
SuperfamilyQ8IV32
Human Protein AtlasENSG00000177352
Peptide AtlasQ8IV32
HPRD08576
IPIIPI00026233   
Protein Interaction databases
DIP (DOE-UCLA)Q8IV32
IntAct (EBI)Q8IV32
FunCoupENSG00000177352
BioGRIDCCDC71
STRING (EMBL)CCDC71
ZODIACCCDC71
Ontologies - Pathways
QuickGOQ8IV32
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC71
Atlas of Cancer Signalling NetworkCCDC71
Wikipedia pathwaysCCDC71
Orthology - Evolution
OrthoDB64925
GeneTree (enSembl)ENSG00000177352
Phylogenetic Trees/Animal Genes : TreeFamCCDC71
HOVERGENQ8IV32
HOGENOMQ8IV32
Homologs : HomoloGeneCCDC71
Homology/Alignments : Family Browser (UCSC)CCDC71
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC71 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC71
dbVarCCDC71
ClinVarCCDC71
1000_GenomesCCDC71 
Exome Variant ServerCCDC71
ExAC (Exome Aggregation Consortium)CCDC71 (select the gene name)
Genetic variants : HAPMAP64925
Genomic Variants (DGV)CCDC71 [DGVbeta]
DECIPHERCCDC71 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC71 
Mutations
ICGC Data PortalCCDC71 
TCGA Data PortalCCDC71 
Broad Tumor PortalCCDC71
OASIS PortalCCDC71 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC71  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC71
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC71
DgiDB (Drug Gene Interaction Database)CCDC71
DoCM (Curated mutations)CCDC71 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC71 (select a term)
intoGenCCDC71
Cancer3DCCDC71(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC71
Genetic Testing Registry CCDC71
NextProtQ8IV32 [Medical]
TSGene64925
GENETestsCCDC71
Target ValidationCCDC71
Huge Navigator CCDC71 [HugePedia]
snp3D : Map Gene to Disease64925
BioCentury BCIQCCDC71
ClinGenCCDC71
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64925
Chemical/Pharm GKB GenePA143485422
Clinical trialCCDC71
Miscellaneous
canSAR (ICR)CCDC71 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC71
EVEXCCDC71
GoPubMedCCDC71
iHOPCCDC71
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:15 CEST 2017
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