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CCDC71L (coiled-coil domain containing 71 like)

Identity

Alias_namesC7orf74
chromosome 7 open reading frame 74
Alias_symbol (synonym)FLJ36031
Other alias
HGNC (Hugo) CCDC71L
LocusID (NCBI) 168455
Atlas_Id 61563
Location 7q22.3  [Link to chromosome band 7q22]
Location_base_pair Starts at 106654362 and ends at 106661188 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC71L   26685
Cards
Entrez_Gene (NCBI)CCDC71L  168455  coiled-coil domain containing 71 like
AliasesC7orf74
GeneCards (Weizmann)CCDC71L
Ensembl hg19 (Hinxton)ENSG00000253276 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000253276 [Gene_View]  chr7:106654362-106661188 [Contig_View]  CCDC71L [Vega]
ICGC DataPortalENSG00000253276
TCGA cBioPortalCCDC71L
AceView (NCBI)CCDC71L
Genatlas (Paris)CCDC71L
WikiGenes168455
SOURCE (Princeton)CCDC71L
Genetics Home Reference (NIH)CCDC71L
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC71L  -     chr7:106654362-106661188 -  7q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC71L  -     7q22.3   [Description]    (hg19-Feb_2009)
EnsemblCCDC71L - 7q22.3 [CytoView hg19]  CCDC71L - 7q22.3 [CytoView hg38]
Mapping of homologs : NCBICCDC71L [Mapview hg19]  CCDC71L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA191066 AI674055 AK021498 AK093350 AK098422
RefSeq transcript (Entrez)NM_175884
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC71L
Cluster EST : UnigeneHs.633903 [ NCBI ]
CGAP (NCI)Hs.633903
Alternative Splicing GalleryENSG00000253276
Gene ExpressionCCDC71L [ NCBI-GEO ]   CCDC71L [ EBI - ARRAY_EXPRESS ]   CCDC71L [ SEEK ]   CCDC71L [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC71L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)168455
GTEX Portal (Tissue expression)CCDC71L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9Z2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9Z2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9Z2
Splice isoforms : SwissVarQ8N9Z2
PhosPhoSitePlusQ8N9Z2
Domains : Interpro (EBI)Ccdc71/71L   
Domain families : Pfam (Sanger)CCDC71L (PF15374)   
Domain families : Pfam (NCBI)pfam15374   
Conserved Domain (NCBI)CCDC71L
DMDM Disease mutations168455
Blocks (Seattle)CCDC71L
SuperfamilyQ8N9Z2
Human Protein AtlasENSG00000253276
Peptide AtlasQ8N9Z2
HPRD08202
IPIIPI00385464   IPI00892949   
Protein Interaction databases
DIP (DOE-UCLA)Q8N9Z2
IntAct (EBI)Q8N9Z2
FunCoupENSG00000253276
BioGRIDCCDC71L
STRING (EMBL)CCDC71L
ZODIACCCDC71L
Ontologies - Pathways
QuickGOQ8N9Z2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC71L
Atlas of Cancer Signalling NetworkCCDC71L
Wikipedia pathwaysCCDC71L
Orthology - Evolution
OrthoDB168455
GeneTree (enSembl)ENSG00000253276
Phylogenetic Trees/Animal Genes : TreeFamCCDC71L
HOVERGENQ8N9Z2
HOGENOMQ8N9Z2
Homologs : HomoloGeneCCDC71L
Homology/Alignments : Family Browser (UCSC)CCDC71L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC71L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC71L
dbVarCCDC71L
ClinVarCCDC71L
1000_GenomesCCDC71L 
Exome Variant ServerCCDC71L
ExAC (Exome Aggregation Consortium)CCDC71L (select the gene name)
Genetic variants : HAPMAP168455
Genomic Variants (DGV)CCDC71L [DGVbeta]
DECIPHERCCDC71L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC71L 
Mutations
ICGC Data PortalCCDC71L 
TCGA Data PortalCCDC71L 
Broad Tumor PortalCCDC71L
OASIS PortalCCDC71L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC71L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC71L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC71L
DgiDB (Drug Gene Interaction Database)CCDC71L
DoCM (Curated mutations)CCDC71L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC71L (select a term)
intoGenCCDC71L
Cancer3DCCDC71L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC71L
Genetic Testing Registry CCDC71L
NextProtQ8N9Z2 [Medical]
TSGene168455
GENETestsCCDC71L
Huge Navigator CCDC71L [HugePedia]
snp3D : Map Gene to Disease168455
BioCentury BCIQCCDC71L
ClinGenCCDC71L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD168455
Chemical/Pharm GKB GenePA166048972
Clinical trialCCDC71L
Miscellaneous
canSAR (ICR)CCDC71L (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC71L
EVEXCCDC71L
GoPubMedCCDC71L
iHOPCCDC71L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:04:58 CEST 2017

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