Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CCDC73 (coiled-coil domain containing 73)

Identity

Alias_symbol (synonym)NY-SAR-79
Other alias
HGNC (Hugo) CCDC73
LocusID (NCBI) 493860
Atlas_Id 45514
Location 11p13  [Link to chromosome band 11p13]
Location_base_pair Starts at 32602080 and ends at 32794658 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)		CCDC73 (11p13) / SEMA4G (10q24.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CCDC73   23261
Cards
Entrez_Gene (NCBI)CCDC73  493860  coiled-coil domain containing 73
AliasesNY-SAR-79
GeneCards (Weizmann)CCDC73
Ensembl hg19 (Hinxton)ENSG00000186714 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186714 [Gene_View]  chr11:32602080-32794658 [Contig_View]  CCDC73 [Vega]
ICGC DataPortalENSG00000186714
TCGA cBioPortalCCDC73
AceView (NCBI)CCDC73
Genatlas (Paris)CCDC73
WikiGenes493860
SOURCE (Princeton)CCDC73
Genetics Home Reference (NIH)CCDC73
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC73  -     chr11:32602080-32794658 -  11p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC73  -     11p13   [Description]    (hg19-Feb_2009)
EnsemblCCDC73 - 11p13 [CytoView hg19]  CCDC73 - 11p13 [CytoView hg38]
Mapping of homologs : NCBICCDC73 [Mapview hg19]  CCDC73 [Mapview hg38]
OMIM612328   
Gene and transcription
Genbank (Entrez)AA521271 AK128159 AK131470 AW088759 AY211922
RefSeq transcript (Entrez)NM_001008391
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC73
Cluster EST : UnigeneHs.706808 [ NCBI ]
CGAP (NCI)Hs.706808
Alternative Splicing GalleryENSG00000186714
Gene ExpressionCCDC73 [ NCBI-GEO ]   CCDC73 [ EBI - ARRAY_EXPRESS ]   CCDC73 [ SEEK ]   CCDC73 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC73 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)493860
GTEX Portal (Tissue expression)CCDC73
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZRK6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZRK6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZRK6
Splice isoforms : SwissVarQ6ZRK6
PhosPhoSitePlusQ6ZRK6
Domains : Interpro (EBI)CCDC73   
Domain families : Pfam (Sanger)CCDC73 (PF15818)   
Domain families : Pfam (NCBI)pfam15818   
Conserved Domain (NCBI)CCDC73
DMDM Disease mutations493860
Blocks (Seattle)CCDC73
SuperfamilyQ6ZRK6
Human Protein AtlasENSG00000186714
Peptide AtlasQ6ZRK6
HPRD17414
IPIIPI00418774   IPI00845359   IPI00854772   IPI00985062   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZRK6
IntAct (EBI)Q6ZRK6
FunCoupENSG00000186714
BioGRIDCCDC73
STRING (EMBL)CCDC73
ZODIACCCDC73
Ontologies - Pathways
QuickGOQ6ZRK6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC73
Atlas of Cancer Signalling NetworkCCDC73
Wikipedia pathwaysCCDC73
Orthology - Evolution
OrthoDB493860
GeneTree (enSembl)ENSG00000186714
Phylogenetic Trees/Animal Genes : TreeFamCCDC73
HOVERGENQ6ZRK6
HOGENOMQ6ZRK6
Homologs : HomoloGeneCCDC73
Homology/Alignments : Family Browser (UCSC)CCDC73
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC73 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC73
dbVarCCDC73
ClinVarCCDC73
1000_GenomesCCDC73 
Exome Variant ServerCCDC73
ExAC (Exome Aggregation Consortium)CCDC73 (select the gene name)
Genetic variants : HAPMAP493860
Genomic Variants (DGV)CCDC73 [DGVbeta]
DECIPHERCCDC73 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC73 
Mutations
ICGC Data PortalCCDC73 
TCGA Data PortalCCDC73 
Broad Tumor PortalCCDC73
OASIS PortalCCDC73 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC73  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC73
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC73
DgiDB (Drug Gene Interaction Database)CCDC73
DoCM (Curated mutations)CCDC73 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC73 (select a term)
intoGenCCDC73
Cancer3DCCDC73(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612328   
Orphanet
MedgenCCDC73
Genetic Testing Registry CCDC73
NextProtQ6ZRK6 [Medical]
TSGene493860
GENETestsCCDC73
Target ValidationCCDC73
Huge Navigator CCDC73 [HugePedia]
snp3D : Map Gene to Disease493860
BioCentury BCIQCCDC73
ClinGenCCDC73
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD493860
Chemical/Pharm GKB GenePA143485424
Clinical trialCCDC73
Miscellaneous
canSAR (ICR)CCDC73 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC73
EVEXCCDC73
GoPubMedCCDC73
iHOPCCDC73
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:27:01 CEST 2017
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