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CCDC73 (coiled-coil domain containing 73)

Identity

Alias (NCBI)NY-SAR-79
HGNC (Hugo) CCDC73
HGNC Alias symbNY-SAR-79
LocusID (NCBI) 493860
Atlas_Id 45514
Location 11p13  [Link to chromosome band 11p13]
Location_base_pair Starts at 32602080 and ends at 32794658 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCDC73 (11p13) / SEMA4G (10q24.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

 

Nomenclature
HGNC (Hugo)CCDC73   23261
Cards
Entrez_Gene (NCBI)CCDC73    coiled-coil domain containing 73
AliasesNY-SAR-79
GeneCards (Weizmann)CCDC73
Ensembl hg19 (Hinxton)ENSG00000186714 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186714 [Gene_View]  ENSG00000186714 [Sequence]  chr11:32602080-32794658 [Contig_View]  CCDC73 [Vega]
ICGC DataPortalENSG00000186714
TCGA cBioPortalCCDC73
AceView (NCBI)CCDC73
Genatlas (Paris)CCDC73
SOURCE (Princeton)CCDC73
Genetics Home Reference (NIH)CCDC73
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC73  -     chr11:32602080-32794658 -  11p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC73  -     11p13   [Description]    (hg19-Feb_2009)
GoldenPathCCDC73 - 11p13 [CytoView hg19]  CCDC73 - 11p13 [CytoView hg38]
ImmunoBaseENSG00000186714
Genome Data Viewer NCBICCDC73 [Mapview hg19]  
OMIM612328   
Gene and transcription
Genbank (Entrez)AA521271 AK128159 AK131470 AW088759 AY211922
RefSeq transcript (Entrez)NM_001008391
Consensus coding sequences : CCDS (NCBI)CCDC73
Gene ExpressionCCDC73 [ NCBI-GEO ]   CCDC73 [ EBI - ARRAY_EXPRESS ]   CCDC73 [ SEEK ]   CCDC73 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC73 [ Firebrowse - Broad ]
GenevisibleExpression of CCDC73 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)493860
GTEX Portal (Tissue expression)CCDC73
Human Protein AtlasENSG00000186714-CCDC73 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZRK6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZRK6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZRK6
PhosPhoSitePlusQ6ZRK6
Domains : Interpro (EBI)CCDC73   
Domain families : Pfam (Sanger)CCDC73 (PF15818)   
Domain families : Pfam (NCBI)pfam15818   
Conserved Domain (NCBI)CCDC73
SuperfamilyQ6ZRK6
AlphaFold pdb e-kbQ6ZRK6   
Human Protein Atlas [tissue]ENSG00000186714-CCDC73 [tissue]
HPRD17414
Protein Interaction databases
DIP (DOE-UCLA)Q6ZRK6
IntAct (EBI)Q6ZRK6
BioGRIDCCDC73
STRING (EMBL)CCDC73
ZODIACCCDC73
Ontologies - Pathways
QuickGOQ6ZRK6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC73
Atlas of Cancer Signalling NetworkCCDC73
Wikipedia pathwaysCCDC73
Orthology - Evolution
OrthoDB493860
GeneTree (enSembl)ENSG00000186714
Phylogenetic Trees/Animal Genes : TreeFamCCDC73
Homologs : HomoloGeneCCDC73
Homology/Alignments : Family Browser (UCSC)CCDC73
Gene fusions - Rearrangements
Fusion : QuiverCCDC73
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC73 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC73
dbVarCCDC73
ClinVarCCDC73
MonarchCCDC73
1000_GenomesCCDC73 
Exome Variant ServerCCDC73
GNOMAD BrowserENSG00000186714
Varsome BrowserCCDC73
ACMGCCDC73 variants
VarityQ6ZRK6
Genomic Variants (DGV)CCDC73 [DGVbeta]
DECIPHERCCDC73 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC73 
Mutations
ICGC Data PortalCCDC73 
TCGA Data PortalCCDC73 
Broad Tumor PortalCCDC73
OASIS PortalCCDC73 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC73  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCCDC73
Mutations and Diseases : HGMDCCDC73
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCCDC73
DgiDB (Drug Gene Interaction Database)CCDC73
DoCM (Curated mutations)CCDC73
CIViC (Clinical Interpretations of Variants in Cancer)CCDC73
Cancer3DCCDC73
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612328   
Orphanet
DisGeNETCCDC73
MedgenCCDC73
Genetic Testing Registry CCDC73
NextProtQ6ZRK6 [Medical]
GENETestsCCDC73
Target ValidationCCDC73
Huge Navigator CCDC73 [HugePedia]
ClinGenCCDC73
Clinical trials, drugs, therapy
MyCancerGenomeCCDC73
Protein Interactions : CTDCCDC73
Pharm GKB GenePA143485424
PharosQ6ZRK6
Clinical trialCCDC73
Miscellaneous
canSAR (ICR)CCDC73
HarmonizomeCCDC73
DataMed IndexCCDC73
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCCDC73
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:02:34 CEST 2021
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