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CCDC74A (coiled-coil domain containing 74A)

Identity

Alias_symbol (synonym)FLJ40345
Other alias-
HGNC (Hugo) CCDC74A
LocusID (NCBI) 90557
Atlas_Id 61564
Location 2q21.1  [Link to chromosome band 2q21]
Location_base_pair Starts at 131527675 and ends at 131533666 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC74A   25197
Cards
Entrez_Gene (NCBI)CCDC74A  90557  coiled-coil domain containing 74A
Aliases
GeneCards (Weizmann)CCDC74A
Ensembl hg19 (Hinxton)ENSG00000163040 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163040 [Gene_View]  chr2:131527675-131533666 [Contig_View]  CCDC74A [Vega]
ICGC DataPortalENSG00000163040
TCGA cBioPortalCCDC74A
AceView (NCBI)CCDC74A
Genatlas (Paris)CCDC74A
WikiGenes90557
SOURCE (Princeton)CCDC74A
Genetics Home Reference (NIH)CCDC74A
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC74A  -     chr2:131527675-131533666 +  2q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC74A  -     2q21.1   [Description]    (hg19-Feb_2009)
EnsemblCCDC74A - 2q21.1 [CytoView hg19]  CCDC74A - 2q21.1 [CytoView hg38]
Mapping of homologs : NCBICCDC74A [Mapview hg19]  CCDC74A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB299086 AB299087 AK097664 AK309113 BC016861
RefSeq transcript (Entrez)NM_001258304 NM_001258305 NM_001258306 NM_001349041 NM_001349042 NM_001349043 NM_001349044 NM_001349045 NM_001349046 NM_001349047 NM_138770
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC74A
Cluster EST : UnigeneHs.351461 [ NCBI ]
CGAP (NCI)Hs.351461
Alternative Splicing GalleryENSG00000163040
Gene ExpressionCCDC74A [ NCBI-GEO ]   CCDC74A [ EBI - ARRAY_EXPRESS ]   CCDC74A [ SEEK ]   CCDC74A [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC74A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90557
GTEX Portal (Tissue expression)CCDC74A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96AQ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96AQ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96AQ1
Splice isoforms : SwissVarQ96AQ1
PhosPhoSitePlusQ96AQ1
Domains : Interpro (EBI)CCDC74    CCDC74_C   
Domain families : Pfam (Sanger)CCDC74_C (PF14917)   
Domain families : Pfam (NCBI)pfam14917   
Conserved Domain (NCBI)CCDC74A
DMDM Disease mutations90557
Blocks (Seattle)CCDC74A
SuperfamilyQ96AQ1
Human Protein AtlasENSG00000163040
Peptide AtlasQ96AQ1
HPRD14274
IPIIPI00303182   IPI00827641   IPI01015012   IPI00640323   IPI00888802   IPI00927547   
Protein Interaction databases
DIP (DOE-UCLA)Q96AQ1
IntAct (EBI)Q96AQ1
FunCoupENSG00000163040
BioGRIDCCDC74A
STRING (EMBL)CCDC74A
ZODIACCCDC74A
Ontologies - Pathways
QuickGOQ96AQ1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC74A
Atlas of Cancer Signalling NetworkCCDC74A
Wikipedia pathwaysCCDC74A
Orthology - Evolution
OrthoDB90557
GeneTree (enSembl)ENSG00000163040
Phylogenetic Trees/Animal Genes : TreeFamCCDC74A
HOVERGENQ96AQ1
HOGENOMQ96AQ1
Homologs : HomoloGeneCCDC74A
Homology/Alignments : Family Browser (UCSC)CCDC74A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC74A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC74A
dbVarCCDC74A
ClinVarCCDC74A
1000_GenomesCCDC74A 
Exome Variant ServerCCDC74A
ExAC (Exome Aggregation Consortium)CCDC74A (select the gene name)
Genetic variants : HAPMAP90557
Genomic Variants (DGV)CCDC74A [DGVbeta]
DECIPHERCCDC74A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC74A 
Mutations
ICGC Data PortalCCDC74A 
TCGA Data PortalCCDC74A 
Broad Tumor PortalCCDC74A
OASIS PortalCCDC74A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC74A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC74A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC74A
DgiDB (Drug Gene Interaction Database)CCDC74A
DoCM (Curated mutations)CCDC74A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC74A (select a term)
intoGenCCDC74A
Cancer3DCCDC74A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC74A
Genetic Testing Registry CCDC74A
NextProtQ96AQ1 [Medical]
TSGene90557
GENETestsCCDC74A
Target ValidationCCDC74A
Huge Navigator CCDC74A [HugePedia]
snp3D : Map Gene to Disease90557
BioCentury BCIQCCDC74A
ClinGenCCDC74A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90557
Chemical/Pharm GKB GenePA143485425
Clinical trialCCDC74A
Miscellaneous
canSAR (ICR)CCDC74A (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC74A
EVEXCCDC74A
GoPubMedCCDC74A
iHOPCCDC74A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:42:42 CEST 2017

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