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CCDC74B (coiled-coil domain containing 74B)

Identity

Alias_symbol (synonym)DKFZp434E2321
Other alias-
HGNC (Hugo) CCDC74B
LocusID (NCBI) 91409
Atlas_Id 61565
Location 2q21.1  [Link to chromosome band 2q21]
Location_base_pair Starts at 130139283 and ends at 130145134 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC74B   25267
Cards
Entrez_Gene (NCBI)CCDC74B  91409  coiled-coil domain containing 74B
Aliases
GeneCards (Weizmann)CCDC74B
Ensembl hg19 (Hinxton)ENSG00000152076 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152076 [Gene_View]  chr2:130139283-130145134 [Contig_View]  CCDC74B [Vega]
ICGC DataPortalENSG00000152076
TCGA cBioPortalCCDC74B
AceView (NCBI)CCDC74B
Genatlas (Paris)CCDC74B
WikiGenes91409
SOURCE (Princeton)CCDC74B
Genetics Home Reference (NIH)CCDC74B
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC74B  -     chr2:130139283-130145134 -  2q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC74B  -     2q21.1   [Description]    (hg19-Feb_2009)
EnsemblCCDC74B - 2q21.1 [CytoView hg19]  CCDC74B - 2q21.1 [CytoView hg38]
Mapping of homologs : NCBICCDC74B [Mapview hg19]  CCDC74B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI300820 AK057609 AK297246 AK302804 AL133619
RefSeq transcript (Entrez)NM_001258307 NM_207310
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC74B
Cluster EST : UnigeneHs.29383 [ NCBI ]
CGAP (NCI)Hs.29383
Alternative Splicing GalleryENSG00000152076
Gene ExpressionCCDC74B [ NCBI-GEO ]   CCDC74B [ EBI - ARRAY_EXPRESS ]   CCDC74B [ SEEK ]   CCDC74B [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC74B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91409
GTEX Portal (Tissue expression)CCDC74B
Human Protein AtlasENSG00000152076-CCDC74B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LY2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LY2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LY2
Splice isoforms : SwissVarQ96LY2
PhosPhoSitePlusQ96LY2
Domains : Interpro (EBI)CCDC74    CCDC74_C   
Domain families : Pfam (Sanger)CCDC74_C (PF14917)   
Domain families : Pfam (NCBI)pfam14917   
Conserved Domain (NCBI)CCDC74B
DMDM Disease mutations91409
Blocks (Seattle)CCDC74B
SuperfamilyQ96LY2
Human Protein Atlas [tissue]ENSG00000152076-CCDC74B [tissue]
Peptide AtlasQ96LY2
HPRD08534
IPIIPI00413033   IPI00827677   IPI00908965   IPI00915747   IPI01019032   IPI00871802   IPI00917255   IPI00917510   IPI00917659   IPI00917803   IPI00916721   IPI00909414   IPI00916048   
Protein Interaction databases
DIP (DOE-UCLA)Q96LY2
IntAct (EBI)Q96LY2
FunCoupENSG00000152076
BioGRIDCCDC74B
STRING (EMBL)CCDC74B
ZODIACCCDC74B
Ontologies - Pathways
QuickGOQ96LY2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC74B
Atlas of Cancer Signalling NetworkCCDC74B
Wikipedia pathwaysCCDC74B
Orthology - Evolution
OrthoDB91409
GeneTree (enSembl)ENSG00000152076
Phylogenetic Trees/Animal Genes : TreeFamCCDC74B
HOVERGENQ96LY2
HOGENOMQ96LY2
Homologs : HomoloGeneCCDC74B
Homology/Alignments : Family Browser (UCSC)CCDC74B
Gene fusions - Rearrangements
Tumor Fusion PortalCCDC74B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC74B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC74B
dbVarCCDC74B
ClinVarCCDC74B
1000_GenomesCCDC74B 
Exome Variant ServerCCDC74B
ExAC (Exome Aggregation Consortium)ENSG00000152076
GNOMAD BrowserENSG00000152076
Genetic variants : HAPMAP91409
Genomic Variants (DGV)CCDC74B [DGVbeta]
DECIPHERCCDC74B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC74B 
Mutations
ICGC Data PortalCCDC74B 
TCGA Data PortalCCDC74B 
Broad Tumor PortalCCDC74B
OASIS PortalCCDC74B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC74B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC74B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC74B
DgiDB (Drug Gene Interaction Database)CCDC74B
DoCM (Curated mutations)CCDC74B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC74B (select a term)
intoGenCCDC74B
Cancer3DCCDC74B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCDC74B
MedgenCCDC74B
Genetic Testing Registry CCDC74B
NextProtQ96LY2 [Medical]
TSGene91409
GENETestsCCDC74B
Target ValidationCCDC74B
Huge Navigator CCDC74B [HugePedia]
snp3D : Map Gene to Disease91409
BioCentury BCIQCCDC74B
ClinGenCCDC74B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91409
Chemical/Pharm GKB GenePA143485426
Clinical trialCCDC74B
Miscellaneous
canSAR (ICR)CCDC74B (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC74B
EVEXCCDC74B
GoPubMedCCDC74B
iHOPCCDC74B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:04:09 CET 2017

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