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CCDC77 (coiled-coil domain containing 77)

Identity

Alias_symbol (synonym)MGC13183
Other alias-
HGNC (Hugo) CCDC77
LocusID (NCBI) 84318
Atlas_Id 54199
Location 12p13.33  [Link to chromosome band 12p13]
Location_base_pair Starts at 401575 and ends at 442640 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
B4GALNT3 (12p13.33) / CCDC77 (12p13.33)KDM5A (12p13.33) / CCDC77 (12p13.33)STAG1 (3q22.3) / CCDC77 (12p13.33)
WNK1 (12p13.33) / CCDC77 (12p13.33)B4GALNT3 12p13.33 / CCDC77 12p13.33STAG1 3q22.3 / CCDC77 12p13.33
WNK1 12p13.33 / CCDC77 12p13.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 4 ]
  t(3;12)(q22;p13) STAG1/CCDC77
B4GALNT3/CCDC77 (12p13)
KDM5A/CCDC77 (12p13)
WNK1/CCDC77 (12p13)


External links

Nomenclature
HGNC (Hugo)CCDC77   28203
Cards
Entrez_Gene (NCBI)CCDC77  84318  coiled-coil domain containing 77
Aliases
GeneCards (Weizmann)CCDC77
Ensembl hg19 (Hinxton)ENSG00000120647 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120647 [Gene_View]  ENSG00000120647 [Sequence]  chr12:401575-442640 [Contig_View]  CCDC77 [Vega]
ICGC DataPortalENSG00000120647
TCGA cBioPortalCCDC77
AceView (NCBI)CCDC77
Genatlas (Paris)CCDC77
WikiGenes84318
SOURCE (Princeton)CCDC77
Genetics Home Reference (NIH)CCDC77
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC77  -     chr12:401575-442640 +  12p13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC77  -     12p13.33   [Description]    (hg19-Feb_2009)
EnsemblCCDC77 - 12p13.33 [CytoView hg19]  CCDC77 - 12p13.33 [CytoView hg38]
Mapping of homologs : NCBICCDC77 [Mapview hg19]  CCDC77 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027638 AK293165 AK308216 AK316029 BC006444
RefSeq transcript (Entrez)NM_001130146 NM_001130147 NM_001130148 NM_032358
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC77
Cluster EST : UnigeneHs.631656 [ NCBI ]
CGAP (NCI)Hs.631656
Alternative Splicing GalleryENSG00000120647
Gene ExpressionCCDC77 [ NCBI-GEO ]   CCDC77 [ EBI - ARRAY_EXPRESS ]   CCDC77 [ SEEK ]   CCDC77 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC77 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84318
GTEX Portal (Tissue expression)CCDC77
Human Protein AtlasENSG00000120647-CCDC77 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BR77   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BR77  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BR77
Splice isoforms : SwissVarQ9BR77
PhosPhoSitePlusQ9BR77
Domains : Interpro (EBI)CCDC77   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC77
DMDM Disease mutations84318
Blocks (Seattle)CCDC77
SuperfamilyQ9BR77
Human Protein Atlas [tissue]ENSG00000120647-CCDC77 [tissue]
Peptide AtlasQ9BR77
HPRD17485
IPIIPI00031678   IPI00908711   IPI01009149   IPI01012186   
Protein Interaction databases
DIP (DOE-UCLA)Q9BR77
IntAct (EBI)Q9BR77
FunCoupENSG00000120647
BioGRIDCCDC77
STRING (EMBL)CCDC77
ZODIACCCDC77
Ontologies - Pathways
QuickGOQ9BR77
Ontology : AmiGOcentrosome  centrosome  membrane  
Ontology : EGO-EBIcentrosome  centrosome  membrane  
NDEx NetworkCCDC77
Atlas of Cancer Signalling NetworkCCDC77
Wikipedia pathwaysCCDC77
Orthology - Evolution
OrthoDB84318
GeneTree (enSembl)ENSG00000120647
Phylogenetic Trees/Animal Genes : TreeFamCCDC77
HOVERGENQ9BR77
HOGENOMQ9BR77
Homologs : HomoloGeneCCDC77
Homology/Alignments : Family Browser (UCSC)CCDC77
Gene fusions - Rearrangements
Fusion : MitelmanB4GALNT3/CCDC77 [12p13.33/12p13.33]  [t(12;12)(p13;p13)]  
Fusion : MitelmanKDM5A/CCDC77 [12p13.33/12p13.33]  [t(12;12)(p13;p13)]  
Fusion : MitelmanSTAG1/CCDC77 [3q22.3/12p13.33]  [t(3;12)(q22;p13)]  
Fusion : MitelmanWNK1/CCDC77 [12p13.33/12p13.33]  [t(12;12)(p13;p13)]  
Fusion PortalB4GALNT3 12p13.33 CCDC77 12p13.33 BRCA
Fusion PortalSTAG1 3q22.3 CCDC77 12p13.33 BRCA
Fusion PortalWNK1 12p13.33 CCDC77 12p13.33 LUAD
Fusion : QuiverCCDC77
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC77 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC77
dbVarCCDC77
ClinVarCCDC77
1000_GenomesCCDC77 
Exome Variant ServerCCDC77
ExAC (Exome Aggregation Consortium)ENSG00000120647
GNOMAD BrowserENSG00000120647
Varsome BrowserCCDC77
Genetic variants : HAPMAP84318
Genomic Variants (DGV)CCDC77 [DGVbeta]
DECIPHERCCDC77 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC77 
Mutations
ICGC Data PortalCCDC77 
TCGA Data PortalCCDC77 
Broad Tumor PortalCCDC77
OASIS PortalCCDC77 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC77  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC77
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC77
DgiDB (Drug Gene Interaction Database)CCDC77
DoCM (Curated mutations)CCDC77 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC77 (select a term)
intoGenCCDC77
Cancer3DCCDC77(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCDC77
MedgenCCDC77
Genetic Testing Registry CCDC77
NextProtQ9BR77 [Medical]
TSGene84318
GENETestsCCDC77
Target ValidationCCDC77
Huge Navigator CCDC77 [HugePedia]
snp3D : Map Gene to Disease84318
BioCentury BCIQCCDC77
ClinGenCCDC77
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84318
Chemical/Pharm GKB GenePA143485429
Clinical trialCCDC77
Miscellaneous
canSAR (ICR)CCDC77 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC77
EVEXCCDC77
GoPubMedCCDC77
iHOPCCDC77
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 10:56:11 CET 2018

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