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CCDC79 (coiled-coil domain containing 79)

Identity

Other alias-
HGNC (Hugo) CCDC79
LocusID (NCBI) 283847
Atlas_Id 61567
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 66788879 and ends at 66835523 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC79   26675
Cards
Entrez_Gene (NCBI)CCDC79  283847  coiled-coil domain containing 79
Aliases
GeneCards (Weizmann)CCDC79
Ensembl hg19 (Hinxton)ENSG00000249961 [Gene_View]  chr16:66788879-66835523 [Contig_View]  CCDC79 [Vega]
Ensembl hg38 (Hinxton)ENSG00000249961 [Gene_View]  chr16:66788879-66835523 [Contig_View]  CCDC79 [Vega]
ICGC DataPortalENSG00000249961
TCGA cBioPortalCCDC79
AceView (NCBI)CCDC79
Genatlas (Paris)CCDC79
WikiGenes283847
SOURCE (Princeton)CCDC79
Genetics Home Reference (NIH)CCDC79
Genomic and cartography
GoldenPath hg19 (UCSC)CCDC79  -     chr16:66788879-66835523 -  16q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCDC79  -     16q22.1   [Description]    (hg38-Dec_2013)
EnsemblCCDC79 - 16q22.1 [CytoView hg19]  CCDC79 - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBICCDC79 [Mapview hg19]  CCDC79 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093213 BC126109
RefSeq transcript (Entrez)NM_001136505 NM_173616
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)CCDC79
Cluster EST : UnigeneHs.376505 [ NCBI ]
CGAP (NCI)Hs.376505
Alternative Splicing GalleryENSG00000249961
Gene ExpressionCCDC79 [ NCBI-GEO ]   CCDC79 [ EBI - ARRAY_EXPRESS ]   CCDC79 [ SEEK ]   CCDC79 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC79 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283847
GTEX Portal (Tissue expression)CCDC79
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NA31   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NA31  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NA31
Splice isoforms : SwissVarQ8NA31
PhosPhoSitePlusQ8NA31
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Homeodomain-like    SANT/Myb   
Domain families : Pfam (Sanger)Myb_DNA-binding (PF00249)   
Domain families : Pfam (NCBI)pfam00249   
Domain families : Smart (EMBL)SANT (SM00717)  
Conserved Domain (NCBI)CCDC79
DMDM Disease mutations283847
Blocks (Seattle)CCDC79
SuperfamilyQ8NA31
Human Protein AtlasENSG00000249961
Peptide AtlasQ8NA31
HPRD08197
IPIIPI00884906   IPI00943328   IPI00807689   IPI01011251   
Protein Interaction databases
DIP (DOE-UCLA)Q8NA31
IntAct (EBI)Q8NA31
FunCoupENSG00000249961
BioGRIDCCDC79
STRING (EMBL)CCDC79
ZODIACCCDC79
Ontologies - Pathways
QuickGOQ8NA31
Ontology : AmiGOchromosome, telomeric region  DNA binding  chromatin binding  synapsis  meiotic telomere clustering  
Ontology : EGO-EBIchromosome, telomeric region  DNA binding  chromatin binding  synapsis  meiotic telomere clustering  
NDEx NetworkCCDC79
Atlas of Cancer Signalling NetworkCCDC79
Wikipedia pathwaysCCDC79
Orthology - Evolution
OrthoDB283847
GeneTree (enSembl)ENSG00000249961
Phylogenetic Trees/Animal Genes : TreeFamCCDC79
HOVERGENQ8NA31
HOGENOMQ8NA31
Homologs : HomoloGeneCCDC79
Homology/Alignments : Family Browser (UCSC)CCDC79
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC79 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC79
dbVarCCDC79
ClinVarCCDC79
1000_GenomesCCDC79 
Exome Variant ServerCCDC79
ExAC (Exome Aggregation Consortium)CCDC79 (select the gene name)
Genetic variants : HAPMAP283847
Genomic Variants (DGV)CCDC79 [DGVbeta]
DECIPHER (Syndromes)16:66788879-66835523  ENSG00000249961
CONAN: Copy Number AnalysisCCDC79 
Mutations
ICGC Data PortalCCDC79 
TCGA Data PortalCCDC79 
Broad Tumor PortalCCDC79
OASIS PortalCCDC79 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC79  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC79
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC79
DgiDB (Drug Gene Interaction Database)CCDC79
DoCM (Curated mutations)CCDC79 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC79 (select a term)
intoGenCCDC79
Cancer3DCCDC79(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC79
Genetic Testing Registry CCDC79
NextProtQ8NA31 [Medical]
TSGene283847
GENETestsCCDC79
Huge Navigator CCDC79 [HugePedia]
snp3D : Map Gene to Disease283847
BioCentury BCIQCCDC79
ClinGenCCDC79
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283847
Chemical/Pharm GKB GenePA162381709
Clinical trialCCDC79
Miscellaneous
canSAR (ICR)CCDC79 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC79
EVEXCCDC79
GoPubMedCCDC79
iHOPCCDC79
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:58:40 CET 2017

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