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CCDC8 (coiled-coil domain containing 8)

Identity

Alias_symbol (synonym)DKFZp564K0322
3M3
PPP1R20
Other aliasp90
HGNC (Hugo) CCDC8
LocusID (NCBI) 83987
Atlas_Id 61568
Location 19q13.32  [Link to chromosome band 19q13]
Location_base_pair Starts at 46913586 and ends at 46916919 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC8   25367
Cards
Entrez_Gene (NCBI)CCDC8  83987  coiled-coil domain containing 8
Aliases3M3; PPP1R20; p90
GeneCards (Weizmann)CCDC8
Ensembl hg19 (Hinxton)ENSG00000169515 [Gene_View]  chr19:46913586-46916919 [Contig_View]  CCDC8 [Vega]
Ensembl hg38 (Hinxton)ENSG00000169515 [Gene_View]  chr19:46913586-46916919 [Contig_View]  CCDC8 [Vega]
ICGC DataPortalENSG00000169515
TCGA cBioPortalCCDC8
AceView (NCBI)CCDC8
Genatlas (Paris)CCDC8
WikiGenes83987
SOURCE (Princeton)CCDC8
Genetics Home Reference (NIH)CCDC8
Genomic and cartography
GoldenPath hg19 (UCSC)CCDC8  -     chr19:46913586-46916919 -  19q13.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCDC8  -     19q13.32   [Description]    (hg38-Dec_2013)
EnsemblCCDC8 - 19q13.32 [CytoView hg19]  CCDC8 - 19q13.32 [CytoView hg38]
Mapping of homologs : NCBICCDC8 [Mapview hg19]  CCDC8 [Mapview hg38]
OMIM614145   614205   
Gene and transcription
Genbank (Entrez)AI301367 AK297668 AL136609 BC015648 BC025243
RefSeq transcript (Entrez)NM_032040
RefSeq genomic (Entrez)NC_000019 NC_018930 NG_031956 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)CCDC8
Cluster EST : UnigeneHs.744359 [ NCBI ]
CGAP (NCI)Hs.744359
Alternative Splicing GalleryENSG00000169515
Gene ExpressionCCDC8 [ NCBI-GEO ]   CCDC8 [ EBI - ARRAY_EXPRESS ]   CCDC8 [ SEEK ]   CCDC8 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83987
GTEX Portal (Tissue expression)CCDC8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0W5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0W5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0W5
Splice isoforms : SwissVarQ9H0W5
PhosPhoSitePlusQ9H0W5
Domains : Interpro (EBI)Coiled-coil_p8    PNMA   
Domain families : Pfam (Sanger)PNMA (PF14893)   
Domain families : Pfam (NCBI)pfam14893   
Conserved Domain (NCBI)CCDC8
DMDM Disease mutations83987
Blocks (Seattle)CCDC8
PDB (SRS)4LG6   
PDB (PDBSum)4LG6   
PDB (IMB)4LG6   
PDB (RSDB)4LG6   
Structural Biology KnowledgeBase4LG6   
SCOP (Structural Classification of Proteins)4LG6   
CATH (Classification of proteins structures)4LG6   
SuperfamilyQ9H0W5
Human Protein AtlasENSG00000169515
Peptide AtlasQ9H0W5
HPRD13009
IPIIPI00290526   IPI00909035   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0W5
IntAct (EBI)Q9H0W5
FunCoupENSG00000169515
BioGRIDCCDC8
STRING (EMBL)CCDC8
ZODIACCCDC8
Ontologies - Pathways
QuickGOQ9H0W5
Ontology : AmiGOmicrotubule cytoskeleton organization  cytoplasm  centrosome  plasma membrane  regulation of mitotic nuclear division  negative regulation of phosphatase activity  3M complex  
Ontology : EGO-EBImicrotubule cytoskeleton organization  cytoplasm  centrosome  plasma membrane  regulation of mitotic nuclear division  negative regulation of phosphatase activity  3M complex  
NDEx NetworkCCDC8
Atlas of Cancer Signalling NetworkCCDC8
Wikipedia pathwaysCCDC8
Orthology - Evolution
OrthoDB83987
GeneTree (enSembl)ENSG00000169515
Phylogenetic Trees/Animal Genes : TreeFamCCDC8
HOVERGENQ9H0W5
HOGENOMQ9H0W5
Homologs : HomoloGeneCCDC8
Homology/Alignments : Family Browser (UCSC)CCDC8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC8
dbVarCCDC8
ClinVarCCDC8
1000_GenomesCCDC8 
Exome Variant ServerCCDC8
ExAC (Exome Aggregation Consortium)CCDC8 (select the gene name)
Genetic variants : HAPMAP83987
Genomic Variants (DGV)CCDC8 [DGVbeta]
DECIPHER (Syndromes)19:46913586-46916919  ENSG00000169515
CONAN: Copy Number AnalysisCCDC8 
Mutations
ICGC Data PortalCCDC8 
TCGA Data PortalCCDC8 
Broad Tumor PortalCCDC8
OASIS PortalCCDC8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC8
DgiDB (Drug Gene Interaction Database)CCDC8
DoCM (Curated mutations)CCDC8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC8 (select a term)
intoGenCCDC8
Cancer3DCCDC8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614145    614205   
Orphanet2393   
MedgenCCDC8
Genetic Testing Registry CCDC8
NextProtQ9H0W5 [Medical]
TSGene83987
GENETestsCCDC8
Huge Navigator CCDC8 [HugePedia]
snp3D : Map Gene to Disease83987
BioCentury BCIQCCDC8
ClinGenCCDC8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83987
Chemical/Pharm GKB GenePA134931534
Clinical trialCCDC8
Miscellaneous
canSAR (ICR)CCDC8 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC8
EVEXCCDC8
GoPubMedCCDC8
iHOPCCDC8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 11:58:40 CET 2017

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