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CCDC80 (coiled-coil domain containing 80)

Identity

Alias_symbol (synonym)URB
SSG1
DRO1
Other aliasokuribin
HGNC (Hugo) CCDC80
LocusID (NCBI) 151887
Atlas_Id 52533
Location 3q13.2  [Link to chromosome band 3q13]
Location_base_pair Starts at 112604386 and ends at 112641143 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCDC80 (3q13.2) / ANKHD1 (5q31.3)CCDC80 (3q13.2) / CCDC80 (3q13.2)CCDC80 (3q13.2) / PTPRC (1q31.3)
CCDC80 (3q13.2) / SLC24A5 (15q21.1)CCDC80 (3q13.2) / SMTN (22q12.2)DAAM2 (6p21.2) / CCDC80 (3q13.2)
FN1 (2q35) / CCDC80 (3q13.2)RPS23 (5q14.2) / CCDC80 (3q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC80   30649
Cards
Entrez_Gene (NCBI)CCDC80  151887  coiled-coil domain containing 80
AliasesDRO1; SSG1; URB; okuribin
GeneCards (Weizmann)CCDC80
Ensembl hg19 (Hinxton)ENSG00000091986 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000091986 [Gene_View]  chr3:112604386-112641143 [Contig_View]  CCDC80 [Vega]
ICGC DataPortalENSG00000091986
TCGA cBioPortalCCDC80
AceView (NCBI)CCDC80
Genatlas (Paris)CCDC80
WikiGenes151887
SOURCE (Princeton)CCDC80
Genetics Home Reference (NIH)CCDC80
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC80  -     chr3:112604386-112641143 -  3q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC80  -     3q13.2   [Description]    (hg19-Feb_2009)
EnsemblCCDC80 - 3q13.2 [CytoView hg19]  CCDC80 - 3q13.2 [CytoView hg38]
Mapping of homologs : NCBICCDC80 [Mapview hg19]  CCDC80 [Mapview hg38]
OMIM608298   
Gene and transcription
Genbank (Entrez)AB052098 AB266387 AF506819 AK075210 AK292881
RefSeq transcript (Entrez)NM_199511 NM_199512
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC80
Cluster EST : UnigeneHs.477128 [ NCBI ]
CGAP (NCI)Hs.477128
Alternative Splicing GalleryENSG00000091986
Gene ExpressionCCDC80 [ NCBI-GEO ]   CCDC80 [ EBI - ARRAY_EXPRESS ]   CCDC80 [ SEEK ]   CCDC80 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC80 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)151887
GTEX Portal (Tissue expression)CCDC80
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ76M96   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ76M96  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ76M96
Splice isoforms : SwissVarQ76M96
PhosPhoSitePlusQ76M96
Domains : Interpro (EBI)DUF4174   
Domain families : Pfam (Sanger)DUF4174 (PF13778)   
Domain families : Pfam (NCBI)pfam13778   
Conserved Domain (NCBI)CCDC80
DMDM Disease mutations151887
Blocks (Seattle)CCDC80
SuperfamilyQ76M96
Human Protein AtlasENSG00000091986
Peptide AtlasQ76M96
HPRD10508
IPIIPI00260630   IPI00844310   IPI00795085   IPI00983745   IPI00946343   
Protein Interaction databases
DIP (DOE-UCLA)Q76M96
IntAct (EBI)Q76M96
FunCoupENSG00000091986
BioGRIDCCDC80
STRING (EMBL)CCDC80
ZODIACCCDC80
Ontologies - Pathways
QuickGOQ76M96
Ontology : AmiGOfibronectin binding  basement membrane  interstitial matrix  extracellular space  heparin binding  positive regulation of cell-substrate adhesion  extracellular matrix organization  
Ontology : EGO-EBIfibronectin binding  basement membrane  interstitial matrix  extracellular space  heparin binding  positive regulation of cell-substrate adhesion  extracellular matrix organization  
NDEx NetworkCCDC80
Atlas of Cancer Signalling NetworkCCDC80
Wikipedia pathwaysCCDC80
Orthology - Evolution
OrthoDB151887
GeneTree (enSembl)ENSG00000091986
Phylogenetic Trees/Animal Genes : TreeFamCCDC80
HOVERGENQ76M96
HOGENOMQ76M96
Homologs : HomoloGeneCCDC80
Homology/Alignments : Family Browser (UCSC)CCDC80
Gene fusions - Rearrangements
Fusion Cancer (Beijing)FN1 [2q35]  -  CCDC80 [3q13.2]  [FUSC002713]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC80 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC80
dbVarCCDC80
ClinVarCCDC80
1000_GenomesCCDC80 
Exome Variant ServerCCDC80
ExAC (Exome Aggregation Consortium)CCDC80 (select the gene name)
Genetic variants : HAPMAP151887
Genomic Variants (DGV)CCDC80 [DGVbeta]
DECIPHERCCDC80 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC80 
Mutations
ICGC Data PortalCCDC80 
TCGA Data PortalCCDC80 
Broad Tumor PortalCCDC80
OASIS PortalCCDC80 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC80  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC80
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC80
DgiDB (Drug Gene Interaction Database)CCDC80
DoCM (Curated mutations)CCDC80 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC80 (select a term)
intoGenCCDC80
Cancer3DCCDC80(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608298   
Orphanet
MedgenCCDC80
Genetic Testing Registry CCDC80
NextProtQ76M96 [Medical]
TSGene151887
GENETestsCCDC80
Target ValidationCCDC80
Huge Navigator CCDC80 [HugePedia]
snp3D : Map Gene to Disease151887
BioCentury BCIQCCDC80
ClinGenCCDC80
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD151887
Chemical/Pharm GKB GenePA144596470
Clinical trialCCDC80
Miscellaneous
canSAR (ICR)CCDC80 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC80
EVEXCCDC80
GoPubMedCCDC80
iHOPCCDC80
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:00:50 CEST 2017

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