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CCDC81 (coiled-coil domain containing 81)

Identity

Alias_symbol (synonym)FLJ16339
FLJ23514
Other alias-
HGNC (Hugo) CCDC81
LocusID (NCBI) 60494
Atlas_Id 54200
Location 11q14.2  [Link to chromosome band 11q14]
Location_base_pair Starts at 86374736 and ends at 86423109 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PICALM (11q14.2) / CCDC81 (11q14.2)TMEM135 (11q14.2) / CCDC81 (11q14.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Small Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)CCDC81   26281
Cards
Entrez_Gene (NCBI)CCDC81  60494  coiled-coil domain containing 81
Aliases
GeneCards (Weizmann)CCDC81
Ensembl hg19 (Hinxton)ENSG00000149201 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149201 [Gene_View]  chr11:86374736-86423109 [Contig_View]  CCDC81 [Vega]
ICGC DataPortalENSG00000149201
TCGA cBioPortalCCDC81
AceView (NCBI)CCDC81
Genatlas (Paris)CCDC81
WikiGenes60494
SOURCE (Princeton)CCDC81
Genetics Home Reference (NIH)CCDC81
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC81  -     chr11:86374736-86423109 +  11q14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC81  -     11q14.2   [Description]    (hg19-Feb_2009)
EnsemblCCDC81 - 11q14.2 [CytoView hg19]  CCDC81 - 11q14.2 [CytoView hg38]
Mapping of homologs : NCBICCDC81 [Mapview hg19]  CCDC81 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI073989 AK027167 AK131331 AK223168 AK298875
RefSeq transcript (Entrez)NM_001156474 NM_021827
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC81
Cluster EST : UnigeneHs.144913 [ NCBI ]
CGAP (NCI)Hs.144913
Alternative Splicing GalleryENSG00000149201
Gene ExpressionCCDC81 [ NCBI-GEO ]   CCDC81 [ EBI - ARRAY_EXPRESS ]   CCDC81 [ SEEK ]   CCDC81 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC81 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)60494
GTEX Portal (Tissue expression)CCDC81
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZN84   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZN84  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZN84
Splice isoforms : SwissVarQ6ZN84
PhosPhoSitePlusQ6ZN84
Domains : Interpro (EBI)Coiled-coil_dom_cont_p_81    DUF4496   
Domain families : Pfam (Sanger)DUF4496 (PF14908)   
Domain families : Pfam (NCBI)pfam14908   
Conserved Domain (NCBI)CCDC81
DMDM Disease mutations60494
Blocks (Seattle)CCDC81
SuperfamilyQ6ZN84
Human Protein AtlasENSG00000149201
Peptide AtlasQ6ZN84
HPRD08032
IPIIPI00807722   IPI00477476   IPI00029203   IPI00979477   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZN84
IntAct (EBI)Q6ZN84
FunCoupENSG00000149201
BioGRIDCCDC81
STRING (EMBL)CCDC81
ZODIACCCDC81
Ontologies - Pathways
QuickGOQ6ZN84
Ontology : AmiGODNA binding  cytoplasm  centrosome  
Ontology : EGO-EBIDNA binding  cytoplasm  centrosome  
NDEx NetworkCCDC81
Atlas of Cancer Signalling NetworkCCDC81
Wikipedia pathwaysCCDC81
Orthology - Evolution
OrthoDB60494
GeneTree (enSembl)ENSG00000149201
Phylogenetic Trees/Animal Genes : TreeFamCCDC81
HOVERGENQ6ZN84
HOGENOMQ6ZN84
Homologs : HomoloGeneCCDC81
Homology/Alignments : Family Browser (UCSC)CCDC81
Gene fusions - Rearrangements
Fusion : MitelmanPICALM/CCDC81 [11q14.2/11q14.2]  [t(11;11)(q14;q14)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC81 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC81
dbVarCCDC81
ClinVarCCDC81
1000_GenomesCCDC81 
Exome Variant ServerCCDC81
ExAC (Exome Aggregation Consortium)CCDC81 (select the gene name)
Genetic variants : HAPMAP60494
Genomic Variants (DGV)CCDC81 [DGVbeta]
DECIPHERCCDC81 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC81 
Mutations
ICGC Data PortalCCDC81 
TCGA Data PortalCCDC81 
Broad Tumor PortalCCDC81
OASIS PortalCCDC81 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC81  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC81
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC81
DgiDB (Drug Gene Interaction Database)CCDC81
DoCM (Curated mutations)CCDC81 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC81 (select a term)
intoGenCCDC81
Cancer3DCCDC81(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC81
Genetic Testing Registry CCDC81
NextProtQ6ZN84 [Medical]
TSGene60494
GENETestsCCDC81
Target ValidationCCDC81
Huge Navigator CCDC81 [HugePedia]
snp3D : Map Gene to Disease60494
BioCentury BCIQCCDC81
ClinGenCCDC81
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD60494
Chemical/Pharm GKB GenePA128394704
Clinical trialCCDC81
Miscellaneous
canSAR (ICR)CCDC81 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC81
EVEXCCDC81
GoPubMedCCDC81
iHOPCCDC81
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 16:57:00 CEST 2017

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