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CCDC82 (coiled-coil domain containing 82)

Identity

Alias_symbol (synonym)FLJ23518
Other aliasHSPC048
HGNC (Hugo) CCDC82
LocusID (NCBI) 79780
Atlas_Id 61569
Location 11q21  [Link to chromosome band 11q21]
Location_base_pair Starts at 96352765 and ends at 96389919 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC82   26282
Cards
Entrez_Gene (NCBI)CCDC82  79780  coiled-coil domain containing 82
AliasesHSPC048
GeneCards (Weizmann)CCDC82
Ensembl hg19 (Hinxton)ENSG00000149231 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149231 [Gene_View]  chr11:96352765-96389919 [Contig_View]  CCDC82 [Vega]
ICGC DataPortalENSG00000149231
TCGA cBioPortalCCDC82
AceView (NCBI)CCDC82
Genatlas (Paris)CCDC82
WikiGenes79780
SOURCE (Princeton)CCDC82
Genetics Home Reference (NIH)CCDC82
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC82  -     chr11:96352765-96389919 -  11q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC82  -     11q21   [Description]    (hg19-Feb_2009)
EnsemblCCDC82 - 11q21 [CytoView hg19]  CCDC82 - 11q21 [CytoView hg38]
Mapping of homologs : NCBICCDC82 [Mapview hg19]  CCDC82 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF161533 AF245436 AK027171 AK056790 AK074306
RefSeq transcript (Entrez)NM_001318736 NM_001318737 NM_014148 NM_024725
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC82
Cluster EST : UnigeneHs.525088 [ NCBI ]
CGAP (NCI)Hs.525088
Alternative Splicing GalleryENSG00000149231
Gene ExpressionCCDC82 [ NCBI-GEO ]   CCDC82 [ EBI - ARRAY_EXPRESS ]   CCDC82 [ SEEK ]   CCDC82 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC82 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79780
GTEX Portal (Tissue expression)CCDC82
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N4S0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N4S0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N4S0
Splice isoforms : SwissVarQ8N4S0
PhosPhoSitePlusQ8N4S0
Domains : Interpro (EBI)DUF4196    DUF4211   
Domain families : Pfam (Sanger)DUF4196 (PF13846)    DUF4211 (PF13926)   
Domain families : Pfam (NCBI)pfam13846    pfam13926   
Conserved Domain (NCBI)CCDC82
DMDM Disease mutations79780
Blocks (Seattle)CCDC82
SuperfamilyQ8N4S0
Human Protein AtlasENSG00000149231
Peptide AtlasQ8N4S0
HPRD08033
IPIIPI00296776   IPI00909799   IPI00023025   IPI01008940   IPI01019095   
Protein Interaction databases
DIP (DOE-UCLA)Q8N4S0
IntAct (EBI)Q8N4S0
FunCoupENSG00000149231
BioGRIDCCDC82
STRING (EMBL)CCDC82
ZODIACCCDC82
Ontologies - Pathways
QuickGOQ8N4S0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC82
Atlas of Cancer Signalling NetworkCCDC82
Wikipedia pathwaysCCDC82
Orthology - Evolution
OrthoDB79780
GeneTree (enSembl)ENSG00000149231
Phylogenetic Trees/Animal Genes : TreeFamCCDC82
HOVERGENQ8N4S0
HOGENOMQ8N4S0
Homologs : HomoloGeneCCDC82
Homology/Alignments : Family Browser (UCSC)CCDC82
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC82 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC82
dbVarCCDC82
ClinVarCCDC82
1000_GenomesCCDC82 
Exome Variant ServerCCDC82
ExAC (Exome Aggregation Consortium)CCDC82 (select the gene name)
Genetic variants : HAPMAP79780
Genomic Variants (DGV)CCDC82 [DGVbeta]
DECIPHERCCDC82 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC82 
Mutations
ICGC Data PortalCCDC82 
TCGA Data PortalCCDC82 
Broad Tumor PortalCCDC82
OASIS PortalCCDC82 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC82  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC82
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC82
DgiDB (Drug Gene Interaction Database)CCDC82
DoCM (Curated mutations)CCDC82 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC82 (select a term)
intoGenCCDC82
Cancer3DCCDC82(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC82
Genetic Testing Registry CCDC82
NextProtQ8N4S0 [Medical]
TSGene79780
GENETestsCCDC82
Target ValidationCCDC82
Huge Navigator CCDC82 [HugePedia]
snp3D : Map Gene to Disease79780
BioCentury BCIQCCDC82
ClinGenCCDC82
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79780
Chemical/Pharm GKB GenePA143485431
Clinical trialCCDC82
Miscellaneous
canSAR (ICR)CCDC82 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC82
EVEXCCDC82
GoPubMedCCDC82
iHOPCCDC82
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:42:43 CEST 2017

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